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5J01
Asym. Unit
Info
Asym.Unit (393 KB)
Biol.Unit 1 (384 KB)
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(1)
Title
:
STRUCTURE OF THE LARIAT FORM OF A CHIMERIC DERIVATIVE OF THE OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN THE PRESENCE OF NH4+ AND MG2+.
Authors
:
M. Costa, H. Walbott, D. Monachello, E. Westhof, F. Michel
Date
:
26 Mar 16 (Deposition) - 14 Dec 16 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.39
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Group Ii Intron, Lariat, 2'-5' Phosphodiester Bond, Ribozyme, Rna Catalysis, Self-Splicing, Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Costa, H. Walbott, D. Monachello, E. Westhof, F. Michel
Crystal Structures Of A Group Ii Intron Lariat Primed For Reverse Splicing.
Science V. 354 2016
[
close entry info
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Hetero Components
(2, 45)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1aa: MAGNESIUM ION (MGaa)
1ab: MAGNESIUM ION (MGab)
1ac: MAGNESIUM ION (MGac)
1ad: MAGNESIUM ION (MGad)
1ae: MAGNESIUM ION (MGae)
1af: MAGNESIUM ION (MGaf)
1ag: MAGNESIUM ION (MGag)
1ah: MAGNESIUM ION (MGah)
1ai: MAGNESIUM ION (MGai)
1aj: MAGNESIUM ION (MGaj)
1ak: MAGNESIUM ION (MGak)
1al: MAGNESIUM ION (MGal)
1am: MAGNESIUM ION (MGam)
1an: MAGNESIUM ION (MGan)
1ao: MAGNESIUM ION (MGao)
1ap: MAGNESIUM ION (MGap)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
1y: MAGNESIUM ION (MGy)
1z: MAGNESIUM ION (MGz)
2a: AMMONIUM ION (NH4a)
2b: AMMONIUM ION (NH4b)
2c: AMMONIUM ION (NH4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
42
Ligand/Ion
MAGNESIUM ION
2
NH4
3
Ligand/Ion
AMMONIUM ION
[
close Hetero Component info
]
Sites
(45, 45)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
C A:358 , G A:359 , C A:377 , U A:419 , HOH A:622
binding site for residue MG A 501
02
AC2
SOFTWARE
U A:4 , HOH A:645 , HOH A:656 , HOH A:666 , HOH A:673 , HOH A:752
binding site for residue MG A 502
03
AC3
SOFTWARE
G A:3 , U A:4 , G A:5 , A A:376 , HOH A:615 , HOH A:641 , HOH A:725
binding site for residue MG A 503
04
AC4
SOFTWARE
HOH A:689 , HOH A:700 , HOH A:738 , HOH A:749 , HOH A:751
binding site for residue MG A 504
05
AC5
SOFTWARE
A A:355 , A A:356 , HOH A:647 , HOH A:680 , HOH A:708 , HOH A:711
binding site for residue MG A 505
06
AC6
SOFTWARE
U A:71 , C A:367 , C A:368 , HOH A:667 , HOH A:687 , HOH A:688 , HOH A:710
binding site for residue MG A 506
07
AC7
SOFTWARE
HOH A:604 , HOH A:619 , HOH A:665 , HOH A:697 , HOH A:702
binding site for residue MG A 507
08
AC8
SOFTWARE
A A:106 , G A:107 , HOH A:626 , HOH A:644 , HOH A:653 , HOH A:664
binding site for residue MG A 508
09
AC9
SOFTWARE
G A:104 , A A:105 , A A:106 , HOH A:603 , HOH A:670
binding site for residue MG A 509
10
AD1
SOFTWARE
G A:111 , HOH A:614 , HOH A:635 , HOH A:660 , HOH A:712 , HOH A:743
binding site for residue MG A 510
11
AD2
SOFTWARE
G A:136 , U A:225 , HOH A:624 , HOH A:636 , HOH A:638 , HOH A:642 , HOH A:681
binding site for residue MG A 511
12
AD3
SOFTWARE
G A:142 , HOH A:646 , HOH A:655 , HOH A:731
binding site for residue MG A 512
13
AD4
SOFTWARE
G A:142 , C A:145 , HOH A:606 , HOH A:607 , HOH A:661 , HOH A:676
binding site for residue MG A 513
14
AD5
SOFTWARE
C A:262 , HOH A:621 , HOH A:625 , HOH A:686 , HOH A:709 , HOH A:757
binding site for residue MG A 514
15
AD6
SOFTWARE
G A:294 , HOH A:613 , HOH A:649 , HOH A:730
binding site for residue MG A 515
16
AD7
SOFTWARE
U A:59 , HOH A:602 , HOH A:616 , HOH A:629 , HOH A:674 , HOH A:740 , HOH A:748
binding site for residue MG A 516
17
AD8
SOFTWARE
C A:6 , C A:7 , HOH A:608 , HOH A:717 , HOH A:719 , HOH A:722
binding site for residue MG A 517
18
AD9
SOFTWARE
U A:66 , A A:67 , HOH A:610 , HOH A:683 , HOH A:685 , HOH A:694
binding site for residue MG A 518
19
AE1
SOFTWARE
A A:154 , G A:155 , HOH A:618 , HOH A:628 , HOH A:659
binding site for residue MG A 519
20
AE2
SOFTWARE
G A:28 , HOH A:617 , HOH A:620 , HOH A:630 , HOH A:713 , HOH A:755
binding site for residue MG A 520
21
AE3
SOFTWARE
A A:318 , HOH A:605 , HOH A:714 , HOH A:735 , HOH A:753
binding site for residue MG A 521
22
AE4
SOFTWARE
HOH A:609 , HOH A:648 , HOH A:691 , HOH A:721 , HOH A:754 , HOH A:758
binding site for residue MG A 522
23
AE5
SOFTWARE
A A:73 , C A:74 , HOH A:611 , HOH A:662 , HOH A:682 , HOH A:701
binding site for residue MG A 523
24
AE6
SOFTWARE
U A:285 , HOH A:663 , HOH A:668 , HOH A:677 , HOH A:706
binding site for residue MG A 524
25
AE7
SOFTWARE
A A:67 , G A:68 , HOH A:632 , HOH A:651 , HOH A:652
binding site for residue MG A 525
26
AE8
SOFTWARE
C A:119 , G A:173 , A A:174 , G A:239 , HOH A:679
binding site for residue MG A 526
27
AE9
SOFTWARE
HOH A:728 , HOH A:729 , HOH A:737 , HOH A:741 , HOH A:744
binding site for residue MG A 527
28
AF1
SOFTWARE
A A:283 , HOH A:650 , HOH A:704 , HOH A:736
binding site for residue MG A 528
29
AF2
SOFTWARE
U A:258 , HOH A:637 , HOH A:715 , HOH A:718 , HOH A:720 , HOH A:747
binding site for residue MG A 529
30
AF3
SOFTWARE
G A:90 , G A:92 , HOH A:732 , HOH A:733 , HOH A:759
binding site for residue MG A 530
31
AF4
SOFTWARE
G A:275 , HOH A:658 , HOH A:671 , HOH A:693 , HOH A:756
binding site for residue MG A 531
32
AF5
SOFTWARE
HOH A:627 , HOH A:633 , HOH A:750 , HOH A:760
binding site for residue MG A 532
33
AF6
SOFTWARE
A A:183 , A A:184 , HOH A:692 , HOH A:696 , HOH A:699
binding site for residue MG A 533
34
AF7
SOFTWARE
HOH A:684 , HOH A:726 , HOH A:761 , HOH A:763 , HOH A:764 , HOH A:765
binding site for residue MG A 534
35
AF8
SOFTWARE
HOH A:639 , HOH A:716 , HOH A:723 , HOH A:739
binding site for residue MG A 535
36
AF9
SOFTWARE
A A:297 , HOH A:640 , HOH A:654 , HOH A:724 , HOH A:734 , HOH A:762
binding site for residue MG A 536
37
AG1
SOFTWARE
A A:333 , U A:334 , G A:335 , HOH A:631 , HOH A:675 , HOH A:698
binding site for residue MG A 537
38
AG2
SOFTWARE
U A:96 , G A:97 , HOH A:657
binding site for residue MG A 538
39
AG3
SOFTWARE
C A:82 , G A:84 , HOH A:612 , HOH A:745
binding site for residue MG A 539
40
AG4
SOFTWARE
A A:223 , A A:224 , HOH A:672
binding site for residue MG A 540
41
AG5
SOFTWARE
A A:137 , A A:151 , A A:224 , HOH A:695 , HOH A:703
binding site for residue MG A 541
42
AG6
SOFTWARE
U A:26 , U A:65 , HOH A:623 , HOH A:727 , HOH A:746
binding site for residue MG A 542
43
AG7
SOFTWARE
A A:283 , G A:284 , HOH A:650
binding site for residue NH4 A 543
44
AG8
SOFTWARE
C A:145 , U A:146 , HOH A:707
binding site for residue NH4 A 544
45
AG9
SOFTWARE
C A:86 , G A:87 , HOH A:705
binding site for residue NH4 A 545
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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