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5HNS
Biol. Unit 2
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Asym.Unit (168 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
STRUCTURE OF GLYCOSYLATED NPC1 LUMINAL DOMAIN C
Authors
:
Y. Zhao, J. Ren, K. Harlos, D. I. Stuart
Date
:
18 Jan 16 (Deposition) - 10 Feb 16 (Release) - 16 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Niemann-Pick Disease Type C, Npc1, Npc2, Cholesterol Transport, Ebola Virus Receptor, Ebola Virus Susceptibility, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhao, J. Ren, K. Harlos, D. I. Stuart
Structure Of Glycosylated Npc1 Luminal Domain C Reveals Insights Into Npc2 And Ebola Virus Interactions.
Febs Lett. V. 590 605 2016
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4a: THIOCYANATE ION (SCNa)
4b: THIOCYANATE ION (SCNb)
4c: THIOCYANATE ION (SCNc)
4d: THIOCYANATE ION (SCNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SCN
2
Ligand/Ion
THIOCYANATE ION
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Sites
(9, 9)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC9 (SOFTWARE)
4: AD1 (SOFTWARE)
5: AD2 (SOFTWARE)
6: AD3 (SOFTWARE)
7: AD4 (SOFTWARE)
8: AD5 (SOFTWARE)
9: AD6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLU B:391 , GLY B:549
binding site for residue SCN B 713
2
AC4
SOFTWARE
GLN B:465 , ASP B:466 , CYS B:468 , TYR B:475 , ASN B:568
binding site for residue SCN B 714
3
AC9
SOFTWARE
TYR A:571 , ASN A:572 , ASP A:573 , ASP B:552 , GLN B:553
binding site for Mono-Saccharide NAG A 707 bound to ASN A 572
4
AD1
SOFTWARE
GLN A:438 , GLN A:442 , ASN A:596 , ASN A:598 , BMA B:712
binding site for Poly-Saccharide residues NAG A 708 through NAG A 709 bound to ASN A 598
5
AD2
SOFTWARE
LEU B:472 , ASN B:476 , ASN B:478 , THR B:536 , HOH B:807
binding site for Poly-Saccharide residues NAG B 701 through NAG B 702 bound to ASN B 478
6
AD3
SOFTWARE
LEU B:472 , ASN B:476 , ASN B:478 , THR B:536 , NAG B:702 , HOH B:807
binding site for Mono-Saccharide NAG B 701 bound to ASN B 478
7
AD4
SOFTWARE
ASN B:524
binding site for Poly-Saccharide residues NAG B 703 through NAG B 704 bound to ASN B 524
8
AD5
SOFTWARE
ALA B:427 , ASP B:428 , PRO B:430 , ASN B:554 , ASN B:556 , ASN B:557 , HOH B:802
binding site for Poly-Saccharide residues NAG B 705 through MAN B 709 bound to ASN B 557
9
AD6
SOFTWARE
NAG A:709 , GLN B:438 , GLN B:442 , ASN B:598
binding site for Poly-Saccharide residues NAG B 710 through BMA B 712 bound to ASN B 598
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (168 KB)
Header - Asym.Unit
Biol.Unit 1 (81 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
Header - Biol.Unit 2
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