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5GMH
Asym. Unit
Info
Asym.Unit (285 KB)
Biol.Unit 1 (274 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MONKEY TLR7 IN COMPLEX WITH R848
Authors
:
Z. Zhang, U. Ohto, T. Shimizu
Date
:
14 Jul 16 (Deposition) - 02 Nov 16 (Release) - 02 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Immune System, Tlr7, Innate Immunity, Ssrna Recogniton
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, U. Ohto, T. Shibata, E. Krayukhina, M. Taoka, Y. Yamauchi, H. Tanji, T. Isobe, S. Uchiyama, K. Miyake, T. Shimizu
Structural Analysis Reveals That Toll-Like Receptor 7 Is A Dual Receptor For Guanosine And Single-Stranded Rna
Immunity V. 45 737 2016
[
close entry info
]
Hetero Components
(3, 48)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2a: 1-[4-AMINO-2-(ETHOXYMETHYL)-1H-IMI... (RX8a)
2b: 1-[4-AMINO-2-(ETHOXYMETHYL)-1H-IMI... (RX8b)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
18
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
RX8
2
Ligand/Ion
1-[4-AMINO-2-(ETHOXYMETHYL)-1H-IMIDAZO[4,5-C]QUINOLIN-1-YL]-2-METHYLPROPAN-2-OL
3
SO4
28
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(45, 45)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:555 , LEU A:557 , GLY A:584 , ILE A:585 , THR A:586 , HOH A:1111 , PHE B:351 , VAL B:355 , TYR B:356 , PHE B:408
binding site for residue RX8 A 901
02
AC2
SOFTWARE
ARG A:308 , TYR A:741 , GLN A:744
binding site for residue SO4 A 911
03
AC3
SOFTWARE
THR A:532 , HIS A:558
binding site for residue SO4 A 912
04
AC4
SOFTWARE
LYS A:386 , SER A:387 , ASN A:413 , HOH A:1094
binding site for residue SO4 A 913
05
AC5
SOFTWARE
HIS A:558 , SER A:559 , THR A:560
binding site for residue SO4 A 914
06
AC6
SOFTWARE
THR A:65 , THR B:832
binding site for residue SO4 A 915
07
AC7
SOFTWARE
ARG A:784 , VAL A:815 , HOH A:1296 , ARG B:784 , SO4 B:911
binding site for residue SO4 A 916
08
AC8
SOFTWARE
LYS A:418 , GLN A:419 , PHE A:420 , LYS A:421 , ARG A:422
binding site for residue SO4 A 917
09
AC9
SOFTWARE
GLY A:61 , GLY A:62 , ARG A:87
binding site for residue SO4 A 918
10
AD1
SOFTWARE
TYR A:184 , ASN A:214 , ASN A:215 , ASN A:234 , ASN A:235 , MET A:236 , TYR A:468 , HOH A:1031 , HOH A:1178
binding site for residue SO4 A 919
11
AD2
SOFTWARE
ARG A:376 , ASP A:427 , VAL A:459 , TYR A:492 , HOH A:1001
binding site for residue SO4 A 920
12
AD3
SOFTWARE
TYR A:751
binding site for residue SO4 A 921
13
AD4
SOFTWARE
LYS A:493 , ARG A:545
binding site for residue SO4 A 922
14
AD5
SOFTWARE
ARG A:736 , LYS A:758 , ARG A:784 , ARG B:784
binding site for residue SO4 A 923
15
AD6
SOFTWARE
SER A:107 , LYS A:108 , SER A:109 , SER B:663 , LYS B:688 , HOH B:1028
binding site for residue SO4 A 924
16
AD7
SOFTWARE
GLN A:496 , LYS A:520 , GLU A:543
binding site for residue SO4 A 925
17
AD8
SOFTWARE
ARG A:750
binding site for residue SO4 A 926
18
AD9
SOFTWARE
LYS A:207 , VAL A:208 , THR A:228 , GLU A:229
binding site for residue SO4 A 927
19
AE1
SOFTWARE
PHE A:351 , VAL A:355 , TYR A:356 , PHE A:408 , THR B:532 , ASP B:555 , GLY B:584 , ILE B:585 , THR B:586
binding site for residue RX8 B 901
20
AE2
SOFTWARE
SO4 A:916 , ARG B:736 , LYS B:758 , HOH B:1145
binding site for residue SO4 B 911
21
AE3
SOFTWARE
ARG B:308 , LYS B:311
binding site for residue SO4 B 912
22
AE4
SOFTWARE
HIS B:558 , SER B:559
binding site for residue SO4 B 913
23
AE5
SOFTWARE
SER A:663 , PHE A:664 , LYS A:688 , SER B:107 , LYS B:108 , SER B:109 , HOH B:1013 , HOH B:1214
binding site for residue SO4 B 914
24
AE6
SOFTWARE
GLN B:496 , LYS B:520 , GLU B:543
binding site for residue SO4 B 915
25
AE7
SOFTWARE
LYS B:418 , GLN B:419 , PHE B:420 , LYS B:421 , ARG B:422
binding site for residue SO4 B 916
26
AE8
SOFTWARE
LYS B:493 , ARG B:545
binding site for residue SO4 B 917
27
AE9
SOFTWARE
PRO B:82 , PHE B:85 , ARG B:121 , SER B:122 , GLY B:125 , LEU B:126 , HOH B:1105
binding site for residue SO4 B 918
28
AF1
SOFTWARE
THR A:832 , THR B:65
binding site for residue SO4 B 919
29
AF2
SOFTWARE
ARG B:357 , ALA B:358 , SER B:359
binding site for residue SO4 B 920
30
AF3
SOFTWARE
THR B:532 , HIS B:558
binding site for residue SO4 B 921
31
AF4
SOFTWARE
ASN A:69 , GLU A:93 , SER A:131
binding site for Mono-Saccharide NAG A 905 bound to ASN A 69
32
AF5
SOFTWARE
CYS A:183 , TYR A:184 , PRO A:188 , CYS A:189 , TYR A:190 , VAL A:191 , SER A:192 , ASN A:215
binding site for Poly-Saccharide residues NAG A 903 through NAG A 904 bound to ASN A 215
33
AF6
SOFTWARE
LYS A:328 , GLY A:331 , ASN A:361 , ASN B:770
binding site for Mono-Saccharide NAG A 910 bound to ASN A 361
34
AF7
SOFTWARE
ASN A:413 , SER A:415 , LYS A:418 , GLN A:514 , HIS A:515 , ARG B:723
binding site for Mono-Saccharide NAG A 908 bound to ASN A 413
35
AF8
SOFTWARE
SER A:490 , CYS A:491 , SER A:501 , LYS A:502 , ASN A:523 , TYR A:546 , ASP A:548 , HOH A:1041
binding site for Mono-Saccharide NAG A 902 bound to ASN A 523
36
AF9
SOFTWARE
ASN A:534 , SER A:536 , HOH A:1241
binding site for Mono-Saccharide NAG A 909 bound to ASN A 534
37
AG1
SOFTWARE
SER A:559 , MET A:588 , ASN A:590 , SER A:613 , HOH A:1273
binding site for Mono-Saccharide NAG A 906 bound to ASN A 590
38
AG2
SOFTWARE
GLU A:242 , ASP A:243 , ASN A:246 , ASN A:284 , ARG A:717 , ASN A:720 , ARG A:723 , HOH A:1020 , HOH A:1032 , HOH A:1203
binding site for Mono-Saccharide NAG A 907 bound to ASN A 720
39
AG3
SOFTWARE
ASN B:69 , VAL B:92 , GLU B:93 , SER B:131 , GLN B:151
binding site for Poly-Saccharide residues NAG B 905 through NAG B 906 bound to ASN B 69
40
AG4
SOFTWARE
CYS B:183 , TYR B:184 , CYS B:189 , TYR B:190 , VAL B:191 , SER B:192 , ASN B:215
binding site for Poly-Saccharide residues NAG B 903 through NAG B 904 bound to ASN B 215
41
AG5
SOFTWARE
GLY B:331 , ASP B:332 , ASN B:361
binding site for Mono-Saccharide NAG B 910 bound to ASN B 361
42
AG6
SOFTWARE
ASN B:413 , SER B:415 , LYS B:418 , GLN B:514 , HIS B:515
binding site for Mono-Saccharide NAG B 909 bound to ASN B 413
43
AG7
SOFTWARE
SER B:490 , CYS B:491 , SER B:501 , ASN B:523 , TYR B:546 , ASP B:548
binding site for Mono-Saccharide NAG B 902 bound to ASN B 523
44
AG8
SOFTWARE
ASN B:534 , SER B:536
binding site for Mono-Saccharide NAG B 908 bound to ASN B 534
45
AG9
SOFTWARE
SER B:559 , MET B:588 , ASN B:590 , SER B:613
binding site for Mono-Saccharide NAG B 907 bound to ASN B 590
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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