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5EVM
Biol. Unit 2
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Asym.Unit (422 KB)
Biol.Unit 1 (208 KB)
Biol.Unit 2 (207 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NIPAH VIRUS FUSION GLYCOPROTEIN IN THE PREFUSION STATE
Authors
:
K. Xu, D. B. Nikolov
Date
:
20 Nov 15 (Deposition) - 16 Dec 15 (Release) - 23 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.37
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Fusion Protein, Nipah, Prefusion, Paramyxovirus, Henipavirus, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Xu, Y. P. Chan, B. Bradel-Tretheway, Z. Akyol-Ataman, Y. Zhu, S. Dutta, L. Yan, Y. Feng, L. F. Wang, G. Skiniotis, B. Lee, Z. H. Zhou, C. C. Broder, H. C. Aguilar, D. B. Nikolov
Crystal Structure Of The Pre-Fusion Nipah Virus Fusion Glycoprotein Reveals A Novel Hexamer-Of-Trimers Assembly.
Plos Pathog. V. 11 05322 2015
[
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Hetero Components
(3, 33)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
2r: ALPHA-D-MANNOSE (MANr)
2s: ALPHA-D-MANNOSE (MANs)
2t: ALPHA-D-MANNOSE (MANt)
2u: ALPHA-D-MANNOSE (MANu)
2v: ALPHA-D-MANNOSE (MANv)
2w: ALPHA-D-MANNOSE (MANw)
3a: MALONATE ION (MLIa)
3b: MALONATE ION (MLIb)
3c: MALONATE ION (MLIc)
3d: MALONATE ION (MLId)
3e: MALONATE ION (MLIe)
3f: MALONATE ION (MLIf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
4ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
4ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
4aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
-1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
12
Ligand/Ion
ALPHA-D-MANNOSE
3
MLI
3
Ligand/Ion
MALONATE ION
4
NAG
18
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(12, 12)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AD7 (SOFTWARE)
05: AD8 (SOFTWARE)
06: AD9 (SOFTWARE)
07: AE1 (SOFTWARE)
08: AE2 (SOFTWARE)
09: AE3 (SOFTWARE)
10: AE4 (SOFTWARE)
11: AE5 (SOFTWARE)
12: AE6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ALA D:174 , LEU D:175 , PHE D:235 , ASN D:238
binding site for residue MLI D 612
02
AC5
SOFTWARE
ALA E:174 , LEU E:175 , PHE E:235 , ASN E:238 , LEU F:201
binding site for residue MLI E 610
03
AC6
SOFTWARE
ALA F:174 , LEU F:175 , PHE F:235 , ASN F:238
binding site for residue MLI F 611
04
AD7
SOFTWARE
GLU D:95 , ASN D:99
binding site for Poly-Saccharide residues NAG D 609 through MAN D 611 bound to ASN D 99
05
AD8
SOFTWARE
ASN D:414 , GLY D:430 , LYS D:431
binding site for Poly-Saccharide residues NAG D 601 through MAN D 604 bound to ASN D 414
06
AD9
SOFTWARE
ASN D:464 , GLN D:468 , SER E:462 , MET E:463 , ASN F:350
binding site for Poly-Saccharide residues NAG D 605 through MAN D 608 bound to ASN D 464
07
AE1
SOFTWARE
GLU E:95 , ILE E:96 , ASN E:99
binding site for Poly-Saccharide residues NAG E 608 through NAG E 609 bound to ASN E 99
08
AE2
SOFTWARE
ASN E:414 , LYS E:431
binding site for Poly-Saccharide residues NAG E 601 through MAN E 603 bound to ASN E 414
09
AE3
SOFTWARE
ASN E:464 , GLN E:468 , GLN F:459
binding site for Poly-Saccharide residues NAG E 604 through MAN E 607 bound to ASN E 464
10
AE4
SOFTWARE
GLU F:95 , ASN F:99
binding site for Poly-Saccharide residues NAG F 601 through NAG F 602 bound to ASN F 99
11
AE5
SOFTWARE
ASN F:414 , GLY F:430 , LYS F:431
binding site for Poly-Saccharide residues NAG F 606 through MAN F 610 bound to ASN F 414
12
AE6
SOFTWARE
GLN D:459 , ASN F:464 , GLN F:468
binding site for Poly-Saccharide residues NAG F 603 through MAN F 605 bound to ASN F 464
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
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Pfam Domains
(0, 0)
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Protein & NOT Site
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Chain D
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Chain F
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (422 KB)
Header - Asym.Unit
Biol.Unit 1 (208 KB)
Header - Biol.Unit 1
Biol.Unit 2 (207 KB)
Header - Biol.Unit 2
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