PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5EFZ
Asym. Unit
Info
Asym.Unit (700 KB)
Biol.Unit 1 (236 KB)
Biol.Unit 2 (230 KB)
Biol.Unit 3 (234 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
MONOCLINIC STRUCTURE OF THE ACETYL ESTERASE MEKB
Authors
:
C. Toelzer, S. Pal, H. Watzlawick, J. Altenbuchner, K. Niefind
Date
:
26 Oct 15 (Deposition) - 16 Dec 15 (Release) - 03 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,E (1x)
Biol. Unit 3: D,F (1x)
Keywords
:
Alpha/Beta Hydrolase, Acetyl Ester Hydrolase, Pseudomonas Veronii, Transferase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Tolzer, S. Pal, H. Watzlawick, J. Altenbuchner, K. Niefind
A Novel Esterase Subfamily With Alpha / Beta-Hydrolase Fold Suggested By Structures Of Two Bacterial Enzymes Homologous To L-Homoserine O-Acetyl Transferases.
Febs Lett. V. 590 174 2016
[
close entry info
]
Hetero Components
(3, 40)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
7
Ligand/Ion
ACETATE ION
2
EDO
25
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
8
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:5 , GLY A:90 , LEU A:91 , ASN A:97
binding site for residue EDO A 401
02
AC2
SOFTWARE
ASP A:299 , LYS A:306 , HOH A:563
binding site for residue EDO A 402
03
AC3
SOFTWARE
SER A:47 , ARG A:158 , ALA A:348 , HOH A:532 , ASP F:45
binding site for residue EDO A 403
04
AC4
SOFTWARE
THR A:184 , THR A:185 , ASP A:186 , PRO A:187 , GLN A:190 , ALA A:191 , HOH A:565
binding site for residue EDO A 404
05
AC5
SOFTWARE
ARG A:167 , ASN A:168 , GLN A:262
binding site for residue EDO A 405
06
AC6
SOFTWARE
GLY A:104 , PRO A:105 , PHE A:107 , ASN A:252 , THR A:256 , HOH A:528 , HOH A:549
binding site for residue EDO A 406
07
AC7
SOFTWARE
ARG A:167 , SER A:169 , LEU A:274 , GLU A:304 , HOH A:531
binding site for residue EDO A 407
08
AC8
SOFTWARE
ALA A:188 , ARG A:195
binding site for residue GOL A 408
09
AC9
SOFTWARE
TRP A:55 , TYR A:56 , SER A:139 , MET A:140 , HIS A:322
binding site for residue ACT A 409
10
AD1
SOFTWARE
ARG B:72 , ASP B:334
binding site for residue EDO B 401
11
AD2
SOFTWARE
ARG B:27 , SER B:101 , SER E:101
binding site for residue EDO B 402
12
AD3
SOFTWARE
LYS B:46 , HOH B:505 , HOH B:596
binding site for residue EDO B 403
13
AD4
SOFTWARE
SER B:291
binding site for residue EDO B 404
14
AD5
SOFTWARE
ARG B:263
binding site for residue EDO B 405
15
AD6
SOFTWARE
TRP B:55 , TYR B:56 , SER B:139 , MET B:140 , HIS B:322
binding site for residue ACT B 406
16
AD7
SOFTWARE
ARG C:195 , EDO C:406 , GOL C:407 , GLN D:294 , HOH D:561 , GLN F:294
binding site for residue EDO C 401
17
AD8
SOFTWARE
ARG C:167 , SER C:169 , LEU C:274 , ASP C:300 , GLU C:304 , HOH C:510 , HOH C:547
binding site for residue EDO C 402
18
AD9
SOFTWARE
GLY C:104 , PRO C:105 , PHE C:107 , ASN C:252 , LEU C:255 , THR C:256 , HOH C:537 , HOH C:546
binding site for residue EDO C 403
19
AE1
SOFTWARE
GLU C:25 , ARG C:27 , PHE C:107 , ASN C:109 , HOH C:512 , HOH C:525 , HOH C:531 , GLU F:312
binding site for residue EDO C 404
20
AE2
SOFTWARE
ASP C:299 , LYS C:306 , HOH C:506 , ARG E:222
binding site for residue EDO C 405
21
AE3
SOFTWARE
GLN C:190 , EDO C:401 , SER F:291 , ASP F:293 , HOH F:510 , HOH F:572
binding site for residue EDO C 406
22
AE4
SOFTWARE
GLN C:190 , ARG C:195 , EDO C:401 , HOH C:515 , SER D:291
binding site for residue GOL C 407
23
AE5
SOFTWARE
ARG C:195 , SER C:196 , ALA C:199 , VAL D:298 , PRO D:315
binding site for residue GOL C 408
24
AE6
SOFTWARE
TRP C:55 , TYR C:56 , SER C:139 , MET C:140 , HIS C:322
binding site for residue ACT C 409
25
AE7
SOFTWARE
SER D:169 , HIS D:171 , PHE D:295 , ASP D:300 , HOH D:501 , HOH D:566 , PRO F:218 , ARG F:222
binding site for residue EDO D 401
26
AE8
SOFTWARE
SER D:303 , LYS D:306 , HOH D:519 , ARG F:222
binding site for residue EDO D 402
27
AE9
SOFTWARE
ARG D:222 , HOH D:601 , ASP F:299
binding site for residue EDO D 403
28
AF1
SOFTWARE
ARG D:27 , PRO D:105 , PHE D:107 , ALA D:108 , ASN D:109 , HOH D:518 , HOH D:555
binding site for residue GOL D 404
29
AF2
SOFTWARE
ILE D:178 , ALA D:182 , LEU D:210 , HOH D:523 , HOH D:537 , ILE F:178 , ALA F:182
binding site for residue GOL D 405
30
AF3
SOFTWARE
TRP D:55 , TYR D:56 , SER D:139 , MET D:140 , HIS D:322
binding site for residue ACT D 406
31
AF4
SOFTWARE
ARG E:167 , LEU E:274 , GLU E:304
binding site for residue EDO E 401
32
AF5
SOFTWARE
GLU E:312 , HOH E:509 , HOH E:514
binding site for residue EDO E 402
33
AF6
SOFTWARE
TRP E:55 , TYR E:56 , SER E:139 , MET E:140 , HIS E:322
binding site for residue ACT E 403
34
AF7
SOFTWARE
ILE C:178 , ALA C:182 , LEU E:210
binding site for residue ACT E 404
35
AF8
SOFTWARE
ARG F:167 , GLY F:272 , ASP F:273 , LEU F:274 , ALA F:275
binding site for residue EDO F 401
36
AF9
SOFTWARE
GLU F:177 , HOH F:525
binding site for residue EDO F 402
37
AG1
SOFTWARE
ARG F:167 , SER F:169 , LEU F:274 , ASP F:300 , SER F:303 , GLU F:304 , HOH F:504 , HOH F:520
binding site for residue GOL F 403
38
AG2
SOFTWARE
SER A:47 , HOH A:522 , ASN F:43 , ASP F:45 , SER F:47 , HOH F:506
binding site for residue GOL F 404
39
AG3
SOFTWARE
ASN A:43 , ALA A:44 , ASP A:45 , SER A:47 , HOH F:506
binding site for residue GOL F 405
40
AG4
SOFTWARE
TRP F:55 , TYR F:56 , SER F:139 , MET F:140 , HIS F:322
binding site for residue ACT F 406
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (700 KB)
Header - Asym.Unit
Biol.Unit 1 (236 KB)
Header - Biol.Unit 1
Biol.Unit 2 (230 KB)
Header - Biol.Unit 2
Biol.Unit 3 (234 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5EFZ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
