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5E6S
Biol. Unit 4
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Asym.Unit (1.0 MB)
Biol.Unit 1 (351 KB)
Biol.Unit 2 (350 KB)
Biol.Unit 3 (352 KB)
Biol.Unit 4, α-C (1.0 MB)
Biol.Unit 4 (1.0 MB)
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Title
:
STRUCTURES OF LEUKOCYTE INTEGRIN ALB2: THE AI DOMAIN, THE HEADPIECE, AND THE POCKET FOR THE INTERNAL LIGAND
Authors
:
T. A. Springer, M. Sen
Date
:
10 Oct 15 (Deposition) - 02 Mar 16 (Release) - 20 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: A,B,C,D,E,F (1x)
Keywords
:
Lymphocyte Function-Associated Antigen-1, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sen, T. A. Springer
Leukocyte Integrin Alpha L Beta 2 Headpiece Structures: The Alpha I Domain, The Pocket For The Internal Ligand, And Concerted Movements Of Its Loops.
Proc. Natl. Acad. Sci. Usa V. 113 2940 2016
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:137 , SER A:139 , SER A:141 , THR A:206 , ASP A:239 , HOH A:4030 , HOH A:4046 , HOH A:4090
binding site for residue MG A 2001
02
AC2
SOFTWARE
ASP A:443 , ASP A:447 , GLU A:449 , GLU A:451 , HOH A:4126 , HOH A:4218
binding site for residue CA A 2002
03
AC3
SOFTWARE
ASP A:505 , ASN A:507 , ASP A:509 , LEU A:511 , ASP A:513 , HOH A:4101
binding site for residue CA A 2003
04
AC4
SOFTWARE
ASP A:565 , GLU A:567 , ASP A:569 , LEU A:571 , ASP A:573 , HOH A:4134
binding site for residue CA A 2004
05
AC5
SOFTWARE
SER B:116 , ASP B:119 , ASP B:120 , GLU B:325 , HOH B:4114 , HOH B:4220
binding site for residue CA B 2002
06
AC6
SOFTWARE
ASP B:151 , ASN B:207 , ASP B:209 , PRO B:211
binding site for residue CA B 2003
07
AC7
SOFTWARE
SER C:139 , SER C:141 , THR C:206 , ASP C:239 , HOH C:4030 , HOH C:4246 , HOH C:4262
binding site for residue MG C 2001
08
AC8
SOFTWARE
ASP C:443 , ASP C:447 , GLU C:449 , GLU C:451 , HOH C:4006 , HOH C:4037
binding site for residue CA C 2002
09
AC9
SOFTWARE
ASP C:505 , ASN C:507 , ASP C:509 , LEU C:511 , ASP C:513 , HOH C:4040
binding site for residue CA C 2003
10
AD1
SOFTWARE
ASP C:565 , ASP C:569 , LEU C:571 , ASP C:573 , HOH C:4291
binding site for residue CA C 2004
11
AD2
SOFTWARE
SER D:116 , ASP D:119 , ASP D:120 , GLU D:325 , HOH D:4176 , HOH D:4212
binding site for residue CA D 2002
12
AD3
SOFTWARE
ASP D:151 , ASN D:207 , ASP D:209 , PRO D:211
binding site for residue CA D 2003
13
AD4
SOFTWARE
SER E:139 , SER E:141 , ASP E:239 , HOH E:4032 , HOH E:4271 , HOH E:4325
binding site for residue MG E 2001
14
AD5
SOFTWARE
ASP E:443 , ASP E:447 , GLU E:449 , GLU E:451 , HOH E:4006 , HOH E:4065
binding site for residue CA E 2002
15
AD6
SOFTWARE
ASP E:505 , ASN E:507 , ASP E:509 , LEU E:511 , ASP E:513 , HOH E:4044
binding site for residue CA E 2003
16
AD7
SOFTWARE
ASP E:565 , ASP E:569 , LEU E:571 , ASP E:573 , HOH E:4002
binding site for residue CA E 2004
17
AD8
SOFTWARE
SER F:116 , ASP F:119 , ASP F:120 , GLU F:325 , HOH F:4071 , HOH F:4235
binding site for residue CA F 2002
18
AD9
SOFTWARE
ASP F:151 , ASN F:207 , ASP F:209 , PRO F:211
binding site for residue CA F 2003
19
AE1
SOFTWARE
ASN A:64 , GLN A:117
binding site for Mono-Saccharide NAG A 3064 bound to ASN A 64
20
AE2
SOFTWARE
ASN B:94 , PHE B:363
binding site for Mono-Saccharide NAG B 3094 bound to ASN B 94
21
AE3
SOFTWARE
ARG B:143 , ASN B:190 , HOH B:4154
binding site for Mono-Saccharide NAG B 3190 bound to ASN B 190
22
AE4
SOFTWARE
ASN C:64 , LEU C:103 , GLN C:117 , ARG C:119
binding site for Mono-Saccharide NAG C 3064 bound to ASN C 64
23
AE5
SOFTWARE
ASN D:94 , GLN D:390
binding site for Mono-Saccharide NAG D 3094 bound to ASN D 94
24
AE6
SOFTWARE
ASN D:190
binding site for Mono-Saccharide NAG D 3190 bound to ASN D 190
25
AE7
SOFTWARE
ASN E:64 , LEU E:103 , HOH E:4015 , HOH E:4152
binding site for Mono-Saccharide NAG E 3064 bound to ASN E 64
26
AE8
SOFTWARE
ASN F:94 , GLN F:390 , HOH F:4141
binding site for Mono-Saccharide NAG F 3094 bound to ASN F 94
27
AE9
SOFTWARE
ARG F:143 , ASN F:190
binding site for Mono-Saccharide NAG F 3190 bound to ASN F 190
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (1.0 MB)
Header - Asym.Unit
Biol.Unit 1 (351 KB)
Header - Biol.Unit 1
Biol.Unit 2 (350 KB)
Header - Biol.Unit 2
Biol.Unit 3 (352 KB)
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Biol.Unit 4 (1.0 MB)
Header - Biol.Unit 4
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