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5DIR
Asym. Unit
Info
Asym.Unit (127 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (32 KB)
Biol.Unit 3 (31 KB)
Biol.Unit 4 (31 KB)
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(1)
Title
:
MEMBRANE PROTEIN AT 2.8 ANGSTROMS
Authors
:
L. Vogeley, T. El Arnaout, J. Bailey, C. Boland, M. Caffrey
Date
:
01 Sep 15 (Deposition) - 02 Mar 16 (Release) - 09 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Membrane Protein, Protease, Antibiotic, Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Vogeley, T. El Arnaout, J. Bailey, P. J. Stansfeld, C. Boland, M. Caffrey
Structural Basis Of Lipoprotein Signal Peptidase Ii Action And Inhibition By The Antibiotic Globomycin.
Science V. 351 876 2016
[
close entry info
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Hetero Components
(6, 44)
Info
All Hetero Components
1a: (2R,3R)-3-(GLYCYLOXY)-2-METHYLNONA... (5BVa)
1b: (2R,3R)-3-(GLYCYLOXY)-2-METHYLNONA... (5BVb)
1c: (2R,3R)-3-(GLYCYLOXY)-2-METHYLNONA... (5BVc)
1d: (2R,3R)-3-(GLYCYLOXY)-2-METHYLNONA... (5BVd)
2a: ALLO-THREONINE (ALOa)
2b: ALLO-THREONINE (ALOb)
2c: ALLO-THREONINE (ALOc)
2d: ALLO-THREONINE (ALOd)
3a: ISO-ISOLEUCINE (IILa)
3b: ISO-ISOLEUCINE (IILb)
3c: ISO-ISOLEUCINE (IILc)
3d: ISO-ISOLEUCINE (IILd)
4a: N-METHYLLEUCINE (MLEa)
4b: N-METHYLLEUCINE (MLEb)
4c: N-METHYLLEUCINE (MLEc)
4d: N-METHYLLEUCINE (MLEd)
5a: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCa)
5b: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCb)
5c: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCc)
5d: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCd)
5e: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCe)
5f: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCf)
5g: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCg)
5h: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCh)
5i: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCi)
5j: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCj)
5k: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCk)
5l: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCl)
5m: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCm)
5n: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCn)
5o: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCo)
5p: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCp)
5q: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCq)
5r: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCr)
5s: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCs)
5t: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCt)
5u: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCu)
5v: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCv)
5w: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCw)
5x: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCx)
6a: SERINE (SERa)
6b: SERINE (SERb)
6c: SERINE (SERc)
6d: SERINE (SERd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5BV
4
Ligand/Ion
(2R,3R)-3-(GLYCYLOXY)-2-METHYLNONANOIC ACID
2
ALO
4
Ligand/Ion
ALLO-THREONINE
3
IIL
4
Ligand/Ion
ISO-ISOLEUCINE
4
MLE
4
Ligand/Ion
N-METHYLLEUCINE
5
OLC
24
Ligand/Ion
(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
6
SER
4
Mod. Amino Acid
SERINE
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:100 , PHE A:139 , ASP A:143 , THR A:147 , VAL A:148 , SER A:203 , ALO A:204 , OLC A:209
binding site for residue OLC A 206
02
AC2
SOFTWARE
SER A:26 , PHE A:29 , GLU A:33 , ILE A:40 , TRP A:49 , LEU A:141 , OLC A:208
binding site for residue OLC A 207
03
AC3
SOFTWARE
VAL A:41 , TRP A:49 , OLC A:207
binding site for residue OLC A 208
04
AC4
SOFTWARE
VAL A:4 , GLY A:8 , PRO A:11 , TRP A:12 , ILE A:15 , LYS A:93 , OLC A:206 , VAL D:25 , ALA D:32
binding site for residue OLC A 209
05
AC5
SOFTWARE
LEU A:10 , PRO A:11 , TRP A:14 , PHE A:20 , GLN D:31 , TYR D:114
binding site for residue OLC A 210
06
AC6
SOFTWARE
PHE A:20 , ARG A:70 , MET A:117 , VAL B:42 , OLC B:211
binding site for residue OLC A 211
07
AC7
SOFTWARE
THR B:55 , PHE B:136 , PRO B:137 , ALA B:138 , PHE B:139 , VAL B:148 , IIL B:202 , ALO B:204 , OLC B:207 , OLC B:208
binding site for residue OLC B 206
08
AC8
SOFTWARE
PHE B:136 , THR B:147 , VAL B:151 , ALA B:154 , OLC B:206
binding site for residue OLC B 207
09
AC9
SOFTWARE
ILE B:40 , VAL B:42 , TRP B:49 , OLC B:206 , OLC B:212
binding site for residue OLC B 208
10
AD1
SOFTWARE
GLY B:8 , ARG B:9 , PRO B:11 , TRP B:12 , LYS B:93 , LEU B:104 , ALA C:32
binding site for residue OLC B 209
11
AD2
SOFTWARE
PHE B:7 , TRP B:14 , VAL B:17 , TRP C:14 , ALA C:28 , TYR C:114
binding site for residue OLC B 210
12
AD3
SOFTWARE
ALA A:63 , ASP A:64 , SER A:65 , TRP A:71 , OLC A:211 , TRP B:130 , TRP B:134
binding site for residue OLC B 211
13
AD4
SOFTWARE
LEU B:22 , SER B:26 , GLU B:33 , ILE B:40 , TRP B:49 , OLC B:208
binding site for residue OLC B 212
14
AD5
SOFTWARE
VAL C:19 , PRO C:137 , PHE C:139 , ASP C:143 , THR C:147 , VAL C:148 , SER C:203 , ALO C:204 , OLC C:211
binding site for residue OLC C 206
15
AD6
SOFTWARE
LEU C:153 , ALO C:204 , 5BV C:205
binding site for residue OLC C 207
16
AD7
SOFTWARE
VAL C:41 , VAL C:42 , OLC C:211
binding site for residue OLC C 208
17
AD8
SOFTWARE
PHE C:20 , LEU C:110 , TYR C:114 , MET C:117 , VAL C:118 , OLC C:210
binding site for residue OLC C 209
18
AD9
SOFTWARE
ARG C:70 , ILE C:78 , VAL C:85 , MET C:117 , OLC C:209 , OLC D:209 , OLC D:210
binding site for residue OLC C 210
19
AE1
SOFTWARE
PHE C:29 , ILE C:40 , TRP C:49 , OLC C:206 , OLC C:208
binding site for residue OLC C 211
20
AE2
SOFTWARE
PHE D:136 , PHE D:139 , ASP D:143 , THR D:147 , VAL D:148 , SER D:203 , ALO D:204
binding site for residue OLC D 206
21
AE3
SOFTWARE
LEU D:22 , GLU D:33 , ILE D:40 , TRP D:49 , LEU D:141 , OLC D:208
binding site for residue OLC D 207
22
AE4
SOFTWARE
OLC D:207 , OLC D:209
binding site for residue OLC D 208
23
AE5
SOFTWARE
SER C:65 , TRP C:71 , MET C:117 , OLC C:210 , TRP D:130 , OLC D:208 , OLC D:210
binding site for residue OLC D 209
24
AE6
SOFTWARE
OLC C:210 , ILE D:43 , TRP D:134 , OLC D:209
binding site for residue OLC D 210
25
AE7
SOFTWARE
ASN A:54 , PHE A:59 , LEU A:62 , LEU A:72 , PHE A:73 , ASN A:112 , ARG A:116 , VAL A:122 , ASP A:124 , ASN A:140 , ASP A:143 , OLC A:206
binding site for Ligand residues ALO A 204 through SER A 203 bound to SER A 203
26
AE8
SOFTWARE
THR B:55 , PHE B:73 , ILE B:76 , ALA B:77 , ASN B:112 , ARG B:116 , VAL B:122 , ASP B:124 , ASP B:143 , ILE B:146 , THR B:147 , OLC B:206
binding site for Ligand residues ALO B 204 through SER B 203 bound to SER B 203
27
AE9
SOFTWARE
ASN C:54 , GLY C:56 , PHE C:59 , PHE C:73 , ASN C:112 , ARG C:116 , VAL C:122 , ASP C:124 , ASN C:140 , ASP C:143 , OLC C:206 , OLC C:207
binding site for Ligand residues ALO C 204 through SER C 203 bound to SER C 203
28
AF1
SOFTWARE
ASN D:54 , ALA D:57 , PHE D:59 , PHE D:73 , ILE D:76 , ALA D:77 , VAL D:80 , ASN D:112 , ARG D:116 , VAL D:122 , ASP D:124 , ASP D:143 , ILE D:146 , OLC D:206
binding site for Ligand residues ALO D 204 through SER D 203 bound to SER D 203
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
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Info
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