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5BCA
Biol. Unit 1
Info
Asym.Unit (352 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (91 KB)
Biol.Unit 4 (92 KB)
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(1)
Title
:
BETA-AMYLASE FROM BACILLUS CEREUS VAR. MYCOIDES
Authors
:
T. Oyama, M. Kusunoki, Y. Kishimoto, Y. Takasaki, Y. Nitta
Date
:
12 Mar 99 (Deposition) - 15 Mar 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase, Beta-Amylase, Raw-Starch Binding Domain
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. Oyama, M. Kusunoki, Y. Kishimoto, Y. Takasaki, Y. Nitta
Crystal Structure Of Beta-Amylase From Bacillus Cereus Var. Mycoides At 2. 2 A Resolution.
J. Biochem. (Tokyo) V. 125 1120 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: CAA (AUTHOR)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:56 , ASP A:60 , GLN A:61 , GLU A:141 , GLU A:144 , HOH A:602
BINDING SITE FOR RESIDUE CA A 601
2
CAA
AUTHOR
GLU A:172 , GLU A:367
CATALYTIC RESIDUES
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d5bcaa1 (A:418-516)
1b: SCOP_d5bcab1 (B:418-516)
1c: SCOP_d5bcac1 (C:418-516)
1d: SCOP_d5bcad1 (D:418-516)
2a: SCOP_d5bcaa2 (A:1-417)
2b: SCOP_d5bcab2 (B:1-417)
2c: SCOP_d5bcac2 (C:1-417)
2d: SCOP_d5bcad2 (D:1-417)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Prealbumin-like
(433)
Superfamily
:
Starch-binding domain-like
(84)
Family
:
Starch-binding domain
(67)
Protein domain
:
beta-amylase
(12)
Bacillus cereus [TaxId: 1396]
(12)
1a
d5bcaa1
A:418-516
1b
d5bcab1
B:418-516
1c
d5bcac1
C:418-516
1d
d5bcad1
D:418-516
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Bacterial beta-amylase
(11)
Bacillus cereus [TaxId: 1396]
(11)
2a
d5bcaa2
A:1-417
2b
d5bcab2
B:1-417
2c
d5bcac2
C:1-417
2d
d5bcad2
D:1-417
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_5bcaA01 (A:1-416)
1b: CATH_5bcaB01 (B:1-416)
1c: CATH_5bcaC01 (C:1-416)
1d: CATH_5bcaD01 (D:1-416)
2a: CATH_5bcaA02 (A:417-516)
2b: CATH_5bcaB02 (B:417-516)
2c: CATH_5bcaC02 (C:417-516)
2d: CATH_5bcaD02 (D:417-516)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Bacillus cereus. Organism_taxid: 1396. Strain: bacillus cereus. Variant: mycoides.
(1)
1a
5bcaA01
A:1-416
1b
5bcaB01
B:1-416
1c
5bcaC01
C:1-416
1d
5bcaD01
D:1-416
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Bacillus cereus. Organism_taxid: 1396. Strain: bacillus cereus. Variant: mycoides.
(1)
2a
5bcaA02
A:417-516
2b
5bcaB02
B:417-516
2c
5bcaC02
C:417-516
2d
5bcaD02
D:417-516
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (352 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (91 KB)
Header - Biol.Unit 3
Biol.Unit 4 (92 KB)
Header - Biol.Unit 4
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