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5B2Q
Asym. Unit
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Asym.Unit (652 KB)
Biol.Unit 1 (635 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FRANCISELLA NOVICIDA CAS9 RHA IN COMPLEX WITH SGRNA AND TARGET DNA (TGG PAM)
Authors
:
H. Hirano, H. Nishimasu, T. Nakane, R. Ishitani, O. Nureki
Date
:
01 Feb 16 (Deposition) - 02 Mar 16 (Release) - 09 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Crispr-Cas9, Genome Engineering, Hydrolase-Rna-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Hirano, J. S. Gootenberg, T. Horii, O. O. Abudayyeh, M. Kimura, P. D. Hsu, T. Nakane, R. Ishitani, I. Hatada, F. Zhang, H. Nishimasu, O. Nureki
Structure And Engineering Of Francisella Novicida Cas9
Cell V. 164 950 2016
[
close entry info
]
Hetero Components
(7, 51)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: (DUa)
5a: 1,2-ETHANEDIOL (EDOa)
5b: 1,2-ETHANEDIOL (EDOb)
5c: 1,2-ETHANEDIOL (EDOc)
5d: 1,2-ETHANEDIOL (EDOd)
5e: 1,2-ETHANEDIOL (EDOe)
5f: 1,2-ETHANEDIOL (EDOf)
5g: 1,2-ETHANEDIOL (EDOg)
5h: 1,2-ETHANEDIOL (EDOh)
5i: 1,2-ETHANEDIOL (EDOi)
5j: 1,2-ETHANEDIOL (EDOj)
5k: 1,2-ETHANEDIOL (EDOk)
5l: 1,2-ETHANEDIOL (EDOl)
5m: 1,2-ETHANEDIOL (EDOm)
5n: 1,2-ETHANEDIOL (EDOn)
5o: 1,2-ETHANEDIOL (EDOo)
5p: 1,2-ETHANEDIOL (EDOp)
5q: 1,2-ETHANEDIOL (EDOq)
5r: 1,2-ETHANEDIOL (EDOr)
5s: 1,2-ETHANEDIOL (EDOs)
5t: 1,2-ETHANEDIOL (EDOt)
5u: 1,2-ETHANEDIOL (EDOu)
5v: 1,2-ETHANEDIOL (EDOv)
5w: 1,2-ETHANEDIOL (EDOw)
5x: 1,2-ETHANEDIOL (EDOx)
6a: SODIUM ION (NAa)
6b: SODIUM ION (NAb)
6c: SODIUM ION (NAc)
6d: SODIUM ION (NAd)
7a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CA
17
Ligand/Ion
CALCIUM ION
3
CL
2
Ligand/Ion
CHLORIDE ION
4
DU
1
Mod. Residue
5
EDO
24
Ligand/Ion
1,2-ETHANEDIOL
6
NA
4
Ligand/Ion
SODIUM ION
7
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:460 , CYS A:657 , CYS A:814 , CYS A:817
binding site for residue ZN A 1701
02
AC2
SOFTWARE
PHE A:647 , ASP A:649 , HOH A:1850 , HOH A:2200 , HOH A:2206 , HOH A:2338
binding site for residue NA A 1702
03
AC3
SOFTWARE
ASN A:1248 , HOH A:1975 , HOH A:2003 , HOH A:2323 , HOH A:2369 , HOH B:534
binding site for residue NA A 1703
04
AC4
SOFTWARE
LYS A:564 , PHE A:602 , HOH A:2267 , HOH A:2334
binding site for residue CL A 1704
05
AC5
SOFTWARE
LYS A:366 , LYS A:370 , TRP A:395 , GLU A:399 , HOH A:2079
binding site for residue CL A 1705
06
AC6
SOFTWARE
ASP A:11 , GLU A:903 , HIS A:1162 , HOH A:1851 , HOH A:1870
binding site for residue CA A 1706
07
AC7
SOFTWARE
ASP A:66 , HOH A:1931 , A B:60 , HOH B:318 , HOH B:458 , HOH B:479 , HOH B:493
binding site for residue CA A 1707
08
AC8
SOFTWARE
HOH A:1804 , HOH A:2088 , HOH A:2335 , HOH A:2342 , HOH C:111 , HOH C:117 , HOH C:157
binding site for residue CA A 1708
09
AC9
SOFTWARE
ASP A:66 , HOH A:1808 , HOH B:267 , HOH B:288 , HOH B:368 , HOH B:398 , HOH B:458 , HOH B:520
binding site for residue CA A 1709
10
AD1
SOFTWARE
VAL A:402 , HOH A:2283 , HOH A:2299 , U B:83 , HOH B:335 , HOH B:503
binding site for residue CA A 1710
11
AD2
SOFTWARE
HOH A:1901 , HOH A:1906 , HOH A:2387 , HOH B:218 , HOH B:257 , HOH B:490
binding site for residue CA A 1711
12
AD3
SOFTWARE
SER A:507 , HOH A:2286 , HOH A:2327 , HOH B:336 , HOH B:440
binding site for residue CA A 1712
13
AD4
SOFTWARE
LYS A:1415 , ASP A:1417 , HOH A:1902 , HOH A:2332 , HOH A:2336
binding site for residue CA A 1713
14
AD5
SOFTWARE
HOH A:1948 , HOH A:2059 , HOH A:2242 , HOH B:282 , HOH B:506 , HOH C:103 , HOH C:152
binding site for residue CA A 1714
15
AD6
SOFTWARE
GLU A:1231 , ASN A:1234 , ASP A:1498 , SER A:1499
binding site for residue CA A 1715
16
AD7
SOFTWARE
LYS A:45 , TYR A:48 , LEU A:50 , LEU A:51 , VAL A:911 , HOH A:2153
binding site for residue EDO A 1716
17
AD8
SOFTWARE
ASP A:90 , THR A:91 , TYR A:332 , ASN A:335 , PHE A:336 , TYR A:345 , HOH A:1914 , HOH A:2279
binding site for residue EDO A 1717
18
AD9
SOFTWARE
HIS A:394 , LEU A:397 , GLY A:398 , HOH A:2016 , HOH B:226 , HOH B:370
binding site for residue EDO A 1718
19
AE1
SOFTWARE
LEU A:626 , TYR A:627 , ILE A:628 , TYR A:656 , ARG A:1093 , GLU A:1097 , HOH A:1990 , HOH A:2099
binding site for residue EDO A 1719
20
AE2
SOFTWARE
ARG A:625 , TYR A:627 , SER A:1118 , PHE A:1119 , HOH A:1972 , HOH A:2165
binding site for residue EDO A 1720
21
AE3
SOFTWARE
LYS A:459 , GLY A:645 , PHE A:647 , ASN A:658 , HOH A:1806 , HOH A:2080
binding site for residue EDO A 1721
22
AE4
SOFTWARE
PRO A:1251 , TYR A:1265 , TYR A:1329 , EDO B:110 , EDO B:116 , HOH B:379
binding site for residue EDO A 1722
23
AE5
SOFTWARE
ASN A:1089 , GLY A:1090 , HOH A:1892 , DC C:21 , DT C:22
binding site for residue EDO A 1723
24
AE6
SOFTWARE
SER A:105 , ILE A:107 , ASP A:406 , PRO A:447 , PRO A:448 , HOH A:2048 , HOH A:2066
binding site for residue EDO A 1724
25
AE7
SOFTWARE
LEU A:6 , SER A:21 , ALA A:22 , PHE A:23 , ASN A:37 , ASN A:877 , ASN A:880
binding site for residue EDO A 1725
26
AE8
SOFTWARE
GLN A:478 , TYR A:530 , LYS A:531 , ASP A:534
binding site for residue EDO A 1726
27
AE9
SOFTWARE
SER A:899 , ALA A:901 , PHE A:904 , ASN A:1089
binding site for residue EDO A 1727
28
AF1
SOFTWARE
ASN A:1248 , SER A:1368 , ARG A:1370 , PHE A:1398 , HOH A:1977 , HOH A:2003 , C B:44 , HOH B:228
binding site for residue ACT A 1728
29
AF2
SOFTWARE
GLN A:92 , THR A:1458 , TRP A:1459 , ASP A:1460 , ASN A:1462 , HOH A:1968 , HOH A:2195 , A B:50
binding site for residue ACT A 1729
30
AF3
SOFTWARE
G B:28 , U B:30 , U B:45 , NA B:102 , HOH B:334 , HOH B:475 , HOH B:515
binding site for residue NA B 101
31
AF4
SOFTWARE
U B:45 , NA B:101 , HOH B:260 , HOH B:279 , HOH B:474 , HOH B:475 , HOH B:514
binding site for residue NA B 102
32
AF5
SOFTWARE
HOH B:210 , HOH B:236 , HOH B:262 , HOH B:269 , HOH B:307 , HOH B:366 , HOH B:504
binding site for residue CA B 103
33
AF6
SOFTWARE
HOH A:2356 , U B:93 , HOH B:455 , HOH B:461 , HOH B:481 , HOH B:529
binding site for residue CA B 104
34
AF7
SOFTWARE
G B:74 , HOH B:283 , HOH B:343 , HOH B:390 , HOH B:399 , HOH B:501
binding site for residue CA B 105
35
AF8
SOFTWARE
HOH A:2322 , HOH B:211 , HOH B:255 , HOH B:344 , HOH B:357 , HOH B:422 , HOH B:531
binding site for residue CA B 106
36
AF9
SOFTWARE
HOH A:2021 , HOH A:2204 , HOH A:2385 , HOH B:222 , HOH B:361 , HOH B:485 , HOH B:513
binding site for residue CA B 107
37
AG1
SOFTWARE
HOH A:2351 , HOH A:2379 , G B:20 , HOH B:206 , HOH B:221 , HOH B:403 , HOH B:425 , HOH B:533
binding site for residue CA B 108
38
AG2
SOFTWARE
U B:12 , G B:13 , HOH B:204 , HOH B:502 , HOH C:123
binding site for residue CA B 109
39
AG3
SOFTWARE
TYR A:1265 , EDO A:1722 , C B:42 , G B:43 , HOH B:258 , HOH B:300
binding site for residue EDO B 110
40
AG4
SOFTWARE
ARG A:1404 , HOH A:2038 , G B:31 , C B:44 , U B:45 , HOH B:275
binding site for residue EDO B 111
41
AG5
SOFTWARE
ARG A:59 , ARG A:62 , HOH A:1931 , A B:61 , G B:62
binding site for residue EDO B 112
42
AG6
SOFTWARE
SER A:105 , TYR A:449 , U B:17 , HOH B:245 , HOH B:264 , HOH B:384
binding site for residue EDO B 113
43
AG7
SOFTWARE
GLY A:309 , G B:19 , G B:20 , HOH B:230 , HOH B:295 , HOH B:298 , HOH C:118
binding site for residue EDO B 114
44
AG8
SOFTWARE
ARG A:369 , G B:73 , C B:89 , HOH B:243 , HOH B:244 , HOH B:308 , HOH B:391
binding site for residue EDO B 115
45
AG9
SOFTWARE
TYR A:1329 , EDO A:1722 , C B:34 , C B:35 , G B:41 , HOH B:300
binding site for residue EDO B 116
46
AH1
SOFTWARE
MET A:52 , ARG A:55 , G B:69 , A B:70 , HOH B:248 , HOH B:394
binding site for residue EDO B 117
47
AH2
SOFTWARE
G B:28 , HOH B:202 , HOH B:260 , HOH B:279 , HOH B:475
binding site for residue EDO B 118
48
AH3
SOFTWARE
C B:32 , G B:33 , C B:34 , HOH B:281 , HOH B:310
binding site for residue EDO B 119
49
AH4
SOFTWARE
A B:71 , G B:94 , HOH B:223
binding site for residue EDO B 120
50
AH5
SOFTWARE
ARG A:455 , LYS A:456 , A B:71 , C B:89 , HOH B:244 , HOH B:262
binding site for residue EDO B 121
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (652 KB)
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