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5AFM
Asym. Unit
Info
Asym.Unit (386 KB)
Biol.Unit 1 (377 KB)
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(1)
Title
:
ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 4
Authors
:
R. Spurny, S. Debaveye, A. Farinha, K. Veys, T. Gossas, J. Atack, D. Bert J. Kemp, A. Vos, U. H. Danielson, G. Tresadern, C. Ulens
Date
:
22 Jan 15 (Deposition) - 06 May 15 (Release) - 15 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Transport Protein, Pentameric Ligand-Gated Ion Channels, Cys-Loop Receptor, Nicotinic Acetylcholine Receptor, Allosteric Modulation, Drug Discovery
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Spurny, S. Debaveye, A. Farinha, K. Veys, A. M. Vos, T. Gossas, J. Atack, S. Bertrand, D. Bertrand, U. H. Danielson, G. Tresadern, C. Ulens
Molecular Blueprint Of Allosteric Binding Sites In A Homologue Of The Agonist-Binding Domain Of The Alpha7 Nicotinic Acetylcholine Receptor.
Proc. Natl. Acad. Sci. Usa V. 112 E2543 2015
[
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]
Hetero Components
(4, 24)
Info
All Hetero Components
1a: 4,5-DIBROMO-N-(3-HYDROXYPROPYL)-1H... (9Z0a)
1b: 4,5-DIBROMO-N-(3-HYDROXYPROPYL)-1H... (9Z0b)
1c: 4,5-DIBROMO-N-(3-HYDROXYPROPYL)-1H... (9Z0c)
1d: 4,5-DIBROMO-N-(3-HYDROXYPROPYL)-1H... (9Z0d)
1e: 4,5-DIBROMO-N-(3-HYDROXYPROPYL)-1H... (9Z0e)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: ALPHA-LOBELINE (L0Ba)
3b: ALPHA-LOBELINE (L0Bb)
3c: ALPHA-LOBELINE (L0Bc)
3d: ALPHA-LOBELINE (L0Bd)
3e: ALPHA-LOBELINE (L0Be)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
9Z0
5
Ligand/Ion
4,5-DIBROMO-N-(3-HYDROXYPROPYL)-1H-PYRROLE-2-CARBOXAMIDE
2
GOL
4
Ligand/Ion
GLYCEROL
3
L0B
5
Ligand/Ion
ALPHA-LOBELINE
4
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:108 , SER A:109 , SER A:110 , HIS A:112 , NAG A:302
BINDING SITE FOR RESIDUE NAG A 301
02
AC2
SOFTWARE
NAG A:301
BINDING SITE FOR RESIDUE NAG A 302
03
AC3
SOFTWARE
TYR A:91 , TRP A:145 , TYR A:184 , CYS A:186 , TYR A:191 , GLN B:55
BINDING SITE FOR RESIDUE L0B A 1205
04
AC4
SOFTWARE
TYR A:91 , ASN A:92 , ALA A:93 , ILE A:94 , SER A:124 , GLN B:37 , VAL B:51 , ILE B:165
BINDING SITE FOR RESIDUE GOL A 1206
05
AC5
SOFTWARE
PHE A:31 , LEU A:54 , LEU A:88 , ALA A:90 , LYS A:96 , PRO A:97 , GLN A:121 , PHE A:142 , HOH A:2040 , LEU B:100
BINDING SITE FOR RESIDUE 9Z0 A 1207
06
AC6
SOFTWARE
ASN B:108 , SER B:109 , SER B:110 , HIS B:112 , NAG B:302
BINDING SITE FOR RESIDUE NAG B 301
07
AC7
SOFTWARE
HIS B:112 , NAG B:301 , HOH B:2035
BINDING SITE FOR RESIDUE NAG B 302
08
AC8
SOFTWARE
TYR B:91 , TRP B:145 , TYR B:184 , CYS B:186 , TYR B:191 , TRP C:53 , GLN C:55 , GLN C:114 , LEU C:116
BINDING SITE FOR RESIDUE L0B B 1207
09
AC9
SOFTWARE
PHE B:52 , LEU B:54 , LEU B:88 , ALA B:90 , PRO B:97 , GLN B:121 , PHE B:142 , VAL C:99 , LEU C:100 , THR C:101
BINDING SITE FOR RESIDUE 9Z0 B 1208
10
BC1
SOFTWARE
ASN C:108 , SER C:109 , SER C:110 , HIS C:112 , GLN C:114 , NAG C:302
BINDING SITE FOR RESIDUE NAG C 301
11
BC2
SOFTWARE
NAG C:301 , HOH C:2068 , HOH C:2069
BINDING SITE FOR RESIDUE NAG C 302
12
BC3
SOFTWARE
TYR C:91 , SER C:144 , TRP C:145 , TYR C:184 , CYS C:186 , CYS C:187 , TYR C:191 , TRP D:53 , GLN D:114 , LEU D:116
BINDING SITE FOR RESIDUE L0B C 1205
13
BC4
SOFTWARE
TYR C:91 , ASN C:92 , ALA C:93 , ILE C:94 , SER C:124 , GLN D:37 , ILE D:165
BINDING SITE FOR RESIDUE GOL C 1206
14
BC5
SOFTWARE
PHE C:31 , LEU C:54 , LEU C:88 , ALA C:90 , PRO C:97 , GLN C:121 , PHE C:142 , HOH C:2031 , HOH C:2070 , LEU D:100
BINDING SITE FOR RESIDUE 9Z0 C 1207
15
BC6
SOFTWARE
ASN D:108 , SER D:109 , SER D:110 , HIS D:112 , GLN D:114 , NAG D:302
BINDING SITE FOR RESIDUE NAG D 301
16
BC7
SOFTWARE
NAG D:301 , HOH D:2073 , HOH D:2074
BINDING SITE FOR RESIDUE NAG D 302
17
BC8
SOFTWARE
TYR D:91 , TRP D:145 , TYR D:184 , CYS D:186 , TYR D:191 , LEU E:36 , TRP E:53 , GLN E:114 , LEU E:116
BINDING SITE FOR RESIDUE L0B D 1205
18
BC9
SOFTWARE
TYR D:91 , ALA D:93 , SER D:124 , GLN E:37 , ILE E:165
BINDING SITE FOR RESIDUE GOL D 1206
19
CC1
SOFTWARE
PHE D:31 , LEU D:54 , LEU D:88 , ALA D:90 , PRO D:97 , GLN D:121 , PHE D:142 , HOH D:2039 , VAL E:99 , THR E:101 , PRO E:102
BINDING SITE FOR RESIDUE 9Z0 D 1207
20
CC2
SOFTWARE
ASN E:108 , SER E:109 , SER E:110 , HIS E:112 , GLN E:114 , NAG E:302
BINDING SITE FOR RESIDUE NAG E 301
21
CC3
SOFTWARE
HIS E:112 , NAG E:301 , HOH E:2062
BINDING SITE FOR RESIDUE NAG E 302
22
CC4
SOFTWARE
TRP A:53 , GLN A:55 , GLN A:114 , LEU A:116 , TYR E:91 , TRP E:145 , CYS E:186 , TYR E:191
BINDING SITE FOR RESIDUE L0B E 1205
23
CC5
SOFTWARE
GLN A:37 , VAL A:51 , ILE A:165 , TYR E:91 , ASN E:92 , ALA E:93 , ILE E:94 , SER E:124
BINDING SITE FOR RESIDUE GOL E 1206
24
CC6
SOFTWARE
VAL A:99 , LEU A:100 , THR A:101 , HOH A:2042 , PHE E:31 , LEU E:88 , ALA E:90 , PRO E:97 , GLN E:121 , PHE E:142
BINDING SITE FOR RESIDUE 9Z0 E 1207
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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