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(-) Description

Title :  ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 4
 
Authors :  R. Spurny, S. Debaveye, A. Farinha, K. Veys, T. Gossas, J. Atack, D. Bert J. Kemp, A. Vos, U. H. Danielson, G. Tresadern, C. Ulens
Date :  22 Jan 15  (Deposition) - 06 May 15  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Transport Protein, Pentameric Ligand-Gated Ion Channels, Cys-Loop Receptor, Nicotinic Acetylcholine Receptor, Allosteric Modulation, Drug Discovery (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Spurny, S. Debaveye, A. Farinha, K. Veys, A. M. Vos, T. Gossas, J. Atack, S. Bertrand, D. Bertrand, U. H. Danielson, G. Tresadern, C. Ulens
Molecular Blueprint Of Allosteric Binding Sites In A Homologue Of The Agonist-Binding Domain Of The Alpha7 Nicotinic Acetylcholine Receptor.
Proc. Natl. Acad. Sci. Usa V. 112 E2543 2015
PubMed-ID: 25918415  |  Reference-DOI: 10.1073/PNAS.1418289112

(-) Compounds

Molecule 1 - ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-7
    Chains: A, C, D, E
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Organism Common: HUMAN, GREAT POND SNAIL
    Organism Scientific: HOMO SAPIENS, LYMNAEA STAGNALIS
    Organism Taxid: 9606, 6523
    Synonym: ALPHA7-ACHBP, ACH-BINDING PROTEIN, ACHBP
 
Molecule 2 - ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-7
    Chains: B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Organism Common: HUMAN, GREAT POND SNAIL, HUMAN
    Organism Scientific: HOMO SAPIENS, LYMNAEA STAGNALIS
    Organism Taxid: 9606, 6523
    Synonym: ALPHA7-ACHBP, ACH-BINDING PROTEIN, ACHBP

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 24)

Asymmetric/Biological Unit (4, 24)
No.NameCountTypeFull Name
19Z05Ligand/Ion4,5-DIBROMO-N-(3-HYDROXYPROPYL)-1H-PYRROLE-2-CARBOXAMIDE
2GOL4Ligand/IonGLYCEROL
3L0B5Ligand/IonALPHA-LOBELINE
4NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:108 , SER A:109 , SER A:110 , HIS A:112 , NAG A:302BINDING SITE FOR RESIDUE NAG A 301
02AC2SOFTWARENAG A:301BINDING SITE FOR RESIDUE NAG A 302
03AC3SOFTWARETYR A:91 , TRP A:145 , TYR A:184 , CYS A:186 , TYR A:191 , GLN B:55BINDING SITE FOR RESIDUE L0B A 1205
04AC4SOFTWARETYR A:91 , ASN A:92 , ALA A:93 , ILE A:94 , SER A:124 , GLN B:37 , VAL B:51 , ILE B:165BINDING SITE FOR RESIDUE GOL A 1206
05AC5SOFTWAREPHE A:31 , LEU A:54 , LEU A:88 , ALA A:90 , LYS A:96 , PRO A:97 , GLN A:121 , PHE A:142 , HOH A:2040 , LEU B:100BINDING SITE FOR RESIDUE 9Z0 A 1207
06AC6SOFTWAREASN B:108 , SER B:109 , SER B:110 , HIS B:112 , NAG B:302BINDING SITE FOR RESIDUE NAG B 301
07AC7SOFTWAREHIS B:112 , NAG B:301 , HOH B:2035BINDING SITE FOR RESIDUE NAG B 302
08AC8SOFTWARETYR B:91 , TRP B:145 , TYR B:184 , CYS B:186 , TYR B:191 , TRP C:53 , GLN C:55 , GLN C:114 , LEU C:116BINDING SITE FOR RESIDUE L0B B 1207
09AC9SOFTWAREPHE B:52 , LEU B:54 , LEU B:88 , ALA B:90 , PRO B:97 , GLN B:121 , PHE B:142 , VAL C:99 , LEU C:100 , THR C:101BINDING SITE FOR RESIDUE 9Z0 B 1208
10BC1SOFTWAREASN C:108 , SER C:109 , SER C:110 , HIS C:112 , GLN C:114 , NAG C:302BINDING SITE FOR RESIDUE NAG C 301
11BC2SOFTWARENAG C:301 , HOH C:2068 , HOH C:2069BINDING SITE FOR RESIDUE NAG C 302
12BC3SOFTWARETYR C:91 , SER C:144 , TRP C:145 , TYR C:184 , CYS C:186 , CYS C:187 , TYR C:191 , TRP D:53 , GLN D:114 , LEU D:116BINDING SITE FOR RESIDUE L0B C 1205
13BC4SOFTWARETYR C:91 , ASN C:92 , ALA C:93 , ILE C:94 , SER C:124 , GLN D:37 , ILE D:165BINDING SITE FOR RESIDUE GOL C 1206
14BC5SOFTWAREPHE C:31 , LEU C:54 , LEU C:88 , ALA C:90 , PRO C:97 , GLN C:121 , PHE C:142 , HOH C:2031 , HOH C:2070 , LEU D:100BINDING SITE FOR RESIDUE 9Z0 C 1207
15BC6SOFTWAREASN D:108 , SER D:109 , SER D:110 , HIS D:112 , GLN D:114 , NAG D:302BINDING SITE FOR RESIDUE NAG D 301
16BC7SOFTWARENAG D:301 , HOH D:2073 , HOH D:2074BINDING SITE FOR RESIDUE NAG D 302
17BC8SOFTWARETYR D:91 , TRP D:145 , TYR D:184 , CYS D:186 , TYR D:191 , LEU E:36 , TRP E:53 , GLN E:114 , LEU E:116BINDING SITE FOR RESIDUE L0B D 1205
18BC9SOFTWARETYR D:91 , ALA D:93 , SER D:124 , GLN E:37 , ILE E:165BINDING SITE FOR RESIDUE GOL D 1206
19CC1SOFTWAREPHE D:31 , LEU D:54 , LEU D:88 , ALA D:90 , PRO D:97 , GLN D:121 , PHE D:142 , HOH D:2039 , VAL E:99 , THR E:101 , PRO E:102BINDING SITE FOR RESIDUE 9Z0 D 1207
20CC2SOFTWAREASN E:108 , SER E:109 , SER E:110 , HIS E:112 , GLN E:114 , NAG E:302BINDING SITE FOR RESIDUE NAG E 301
21CC3SOFTWAREHIS E:112 , NAG E:301 , HOH E:2062BINDING SITE FOR RESIDUE NAG E 302
22CC4SOFTWARETRP A:53 , GLN A:55 , GLN A:114 , LEU A:116 , TYR E:91 , TRP E:145 , CYS E:186 , TYR E:191BINDING SITE FOR RESIDUE L0B E 1205
23CC5SOFTWAREGLN A:37 , VAL A:51 , ILE A:165 , TYR E:91 , ASN E:92 , ALA E:93 , ILE E:94 , SER E:124BINDING SITE FOR RESIDUE GOL E 1206
24CC6SOFTWAREVAL A:99 , LEU A:100 , THR A:101 , HOH A:2042 , PHE E:31 , LEU E:88 , ALA E:90 , PRO E:97 , GLN E:121 , PHE E:142BINDING SITE FOR RESIDUE 9Z0 E 1207

(-) SS Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1A:125 -A:138
2A:186 -A:187
3B:125 -B:138
4B:186 -B:187
5C:125 -C:138
6C:186 -C:187
7D:125 -D:138
8D:186 -D:187
9E:125 -E:138
10E:186 -E:187

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AFM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AFM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AFM)

(-) Exons   (0, 0)

(no "Exon" information available for 5AFM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee..hhhhhh...eeeeeeeee.......eeeee.............eeeeeeeeeeeeeee..eeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afm A   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     


Chain B from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee...............eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee..hhhhhh...eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afm B   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKGRS 206
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       


Chain C from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee..hhhhhh...eeeeeeeee.......eeeee.............eeeeeeeeeeeeee......eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afm C   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     


Chain D from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee..........eeeee.hhh....eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afm D   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     


Chain E from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee..hhhhhh...eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afm E   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AFM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AFM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AFM)

(-) Gene Ontology  (35, 43)

Asymmetric/Biological Unit(hide GO term definitions)

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  5afm
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  ACHP_LYMST | P58154
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACHA7_HUMAN | P36544: 2maw 5afh 5afj 5afk 5afl 5afn
        ACHP_LYMST | P58154: 1i9b 1uv6 1uw6 1ux2 1yi5 2zju 2zjv 3u8j 3u8k 3u8l 3u8m 3u8n 3wip 3wth 3wti 3wtj 3wtk 3wtl 3wtm 3wtn 3wto 3zdg 3zdh 4alx 4hqp 4nzb 4qaa 4qab 4qac 4um1 4um3 4zjt 4zk1 4zr6 4zru 5afh 5afj 5afk 5afl 5afn 5bp0 5j5f 5j5g 5j5h 5j5i 5t90

(-) Related Entries Specified in the PDB File

5afh ALPHA7-ACHBP IN COMPLEX WITH LOBELINE
5afj ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 1
5afk ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 2
5afl ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 3
5afn ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 5