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5AFL
Asym. Unit
Info
Asym.Unit (378 KB)
Biol.Unit 1 (369 KB)
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(1)
Title
:
ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 3
Authors
:
R. Spurny, S. Debaveye, A. Farinha, K. Veys, T. Gossas, J. Atack, D. Bert J. Kemp, A. Vos, U. H. Danielson, G. Tresadern, C. Ulens
Date
:
22 Jan 15 (Deposition) - 06 May 15 (Release) - 15 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.39
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Transport Protein, Pentameric Ligand-Gated Ion Channels, Cys-Loop Receptor, Nicotinic Acetylcholine Receptor, Allosteric Modulation, Drug Discovery
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Spurny, S. Debaveye, A. Farinha, K. Veys, A. M. Vos, T. Gossas, J. Atack, S. Bertrand, D. Bertrand, U. H. Danielson, G. Tresadern, C. Ulens
Molecular Blueprint Of Allosteric Binding Sites In A Homologue Of The Agonist-Binding Domain Of The Alpha7 Nicotinic Acetylcholine Receptor.
Proc. Natl. Acad. Sci. Usa V. 112 E2543 2015
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Hetero Components
(7, 24)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: N-(3-METHYLPHENYL)PYRROLIDINE-1-CA... (FHVa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: ALPHA-LOBELINE (L0Ba)
4b: ALPHA-LOBELINE (L0Bb)
4c: ALPHA-LOBELINE (L0Bc)
4d: ALPHA-LOBELINE (L0Bd)
4e: ALPHA-LOBELINE (L0Be)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
7a: L(+)-TARTARIC ACID (TLAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
FHV
1
Ligand/Ion
N-(3-METHYLPHENYL)PYRROLIDINE-1-CARBOXAMIDE
3
GOL
5
Ligand/Ion
GLYCEROL
4
L0B
5
Ligand/Ion
ALPHA-LOBELINE
5
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7
TLA
1
Ligand/Ion
L(+)-TARTARIC ACID
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:91 , TRP A:145 , CYS A:186 , TYR A:191 , TRP B:53 , GLN B:55 , GLN B:114
BINDING SITE FOR RESIDUE L0B A 1205
02
AC2
SOFTWARE
ASP A:42 , ASN A:45 , VAL A:47 , ILE A:94 , ARG A:122 , ARG B:120
BINDING SITE FOR RESIDUE GOL A 1206
03
AC3
SOFTWARE
PRO A:16 , ILE A:80 , SER A:81 , LEU A:83 , TRP A:84 , VAL A:85
BINDING SITE FOR RESIDUE GOL A 1207
04
AC4
SOFTWARE
TYR B:7 , LEU B:10 , VAL B:11 , TYR B:14 , LEU B:63 , SER B:82 , LEU B:83
BINDING SITE FOR RESIDUE TLA B 1205
05
AC5
SOFTWARE
PRO B:16 , ILE B:80 , SER B:81 , LEU B:83 , TRP B:84 , VAL B:85 , HOH B:2004
BINDING SITE FOR RESIDUE GOL B 1206
06
AC6
SOFTWARE
TYR B:91 , TRP B:145 , CYS B:186 , CYS B:187 , TYR B:191 , TRP C:53 , GLN C:114 , LEU C:116
BINDING SITE FOR RESIDUE L0B C 1205
07
AC7
SOFTWARE
TYR C:91 , TRP C:145 , TYR C:184 , CYS C:186 , TYR C:191 , TRP D:53 , GLN D:55 , GLN D:114 , LEU D:116
BINDING SITE FOR RESIDUE L0B C 1206
08
AC8
SOFTWARE
TYR D:91 , TRP D:145 , TYR D:184 , CYS D:186 , TYR D:191 , TRP E:53 , GLN E:55 , GLN E:114 , LEU E:116
BINDING SITE FOR RESIDUE L0B D 1205
09
AC9
SOFTWARE
PRO D:16 , ILE D:80 , SER D:81 , LEU D:83 , TRP D:84 , VAL D:85 , HOH D:2020
BINDING SITE FOR RESIDUE GOL D 1206
10
BC1
SOFTWARE
TRP A:53 , GLN A:114 , LEU A:116 , ARG D:23 , TYR E:91 , SER E:144 , TRP E:145 , CYS E:186 , CYS E:187 , TYR E:191
BINDING SITE FOR RESIDUE L0B E 1205
11
BC2
SOFTWARE
PRO E:16 , ILE E:80 , SER E:81 , LEU E:83 , TRP E:84 , VAL E:85
BINDING SITE FOR RESIDUE GOL E 1206
12
BC3
SOFTWARE
ASP D:17 , VAL D:18 , HOH D:2005 , GLN E:3 , TYR E:7 , LEU E:10 , TYR E:14 , LEU E:63 , VAL E:76 , SER E:77 , VAL E:78 , SER E:82
BINDING SITE FOR RESIDUE FHV E 1207
13
BC4
SOFTWARE
TYR A:30 , ASN A:108 , SER A:109 , SER A:110 , HIS A:112 , HOH A:2057 , ASP D:153 , ARG D:179 , GLU D:181 , HOH D:2034
Binding site for Poly-Saccharide residues NAG A 301 through BMA A 304 bound to ASN A 108
14
BC5
SOFTWARE
ASN B:108 , SER B:109 , SER B:110 , HIS B:112
Binding site for Poly-Saccharide residues NAG B 301 through NAG B 302 bound to ASN B 108
15
BC6
SOFTWARE
ASN C:108 , SER C:109 , SER C:110 , HIS C:112
Binding site for Poly-Saccharide residues NAG C 301 through NAG C 302 bound to ASN C 108
16
BC7
SOFTWARE
ASN D:108 , SER D:109 , SER D:110 , HIS D:112
Binding site for Poly-Saccharide residues NAG D 301 through NAG D 302 bound to ASN D 108
17
BC8
SOFTWARE
ASN E:108 , SER E:109 , SER E:110 , HIS E:112
Binding site for Poly-Saccharide residues NAG E 301 through NDG E 302 bound to ASN E 108
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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wireframe 100
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Asym.Unit (378 KB)
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Biol.Unit 1 (369 KB)
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