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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 3

Authors :   R. Spurny, S. Debaveye, A. Farinha, K. Veys, T. Gossas, J. Atack, D. Bert J. Kemp, A. Vos, U. H. Danielson, G. Tresadern, C. Ulens

Date :   22 Jan 15 (Deposition) - 06 May 15 (Release) - 15 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.39

Chains :   Asym./Biol. Unit : A,B,C,D,E

Keywords :   Transport Protein, Pentameric Ligand-Gated Ion Channels, Cys-Loop Receptor, Nicotinic Acetylcholine Receptor, Allosteric Modulation, Drug Discovery (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Spurny, S. Debaveye, A. Farinha, K. Veys, A. M. Vos, T. Gossas, J. Atack, S. Bertrand, D. Bertrand, U. H. Danielson, G. Tresadern, C. Ulens
Molecular Blueprint Of Allosteric Binding Sites In A Homologue Of The Agonist-Binding Domain Of The Alpha7 Nicotinic Acetylcholine Receptor.
Proc. Natl. Acad. Sci. Usa V. 112 E2543 2015
PubMed-ID: 25918415 | Reference-DOI: 10.1073/PNAS.1418289112

Molecule 1 - ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-7
	Chains	:	A, B, C, D, E
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF21
	Expression System Common	:	FALL ARMYWORM
	Expression System Taxid	:	7108
	Organism Common	:	HUMAN, GREAT POND SNAIL
	Organism Scientific	:	HOMO SAPIENS, LYMNAEA STAGNALIS
	Organism Taxid	:	9606, 6523
	Synonym	:	ALPHA7-ACHBP, ACH-BINDING PROTEIN, ACHBP

		1	2	3	4	5
Asymmetric/Biological Unit	:	A	B	C	D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (7, 24)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	FHV	1	Ligand/Ion	N-(3-METHYLPHENYL)PYRROLIDINE-1-CARBOXAMIDE
3	GOL	5	Ligand/Ion	GLYCEROL
4	L0B	5	Ligand/Ion	ALPHA-LOBELINE
5	NAG	9	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
6	NDG	1	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7	TLA	1	Ligand/Ion	L(+)-TARTARIC ACID

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:91 , TRP A:145 , CYS A:186 , TYR A:191 , TRP B:53 , GLN B:55 , GLN B:114	BINDING SITE FOR RESIDUE L0B A 1205
02	AC2	SOFTWARE	ASP A:42 , ASN A:45 , VAL A:47 , ILE A:94 , ARG A:122 , ARG B:120	BINDING SITE FOR RESIDUE GOL A 1206
03	AC3	SOFTWARE	PRO A:16 , ILE A:80 , SER A:81 , LEU A:83 , TRP A:84 , VAL A:85	BINDING SITE FOR RESIDUE GOL A 1207
04	AC4	SOFTWARE	TYR B:7 , LEU B:10 , VAL B:11 , TYR B:14 , LEU B:63 , SER B:82 , LEU B:83	BINDING SITE FOR RESIDUE TLA B 1205
05	AC5	SOFTWARE	PRO B:16 , ILE B:80 , SER B:81 , LEU B:83 , TRP B:84 , VAL B:85 , HOH B:2004	BINDING SITE FOR RESIDUE GOL B 1206
06	AC6	SOFTWARE	TYR B:91 , TRP B:145 , CYS B:186 , CYS B:187 , TYR B:191 , TRP C:53 , GLN C:114 , LEU C:116	BINDING SITE FOR RESIDUE L0B C 1205
07	AC7	SOFTWARE	TYR C:91 , TRP C:145 , TYR C:184 , CYS C:186 , TYR C:191 , TRP D:53 , GLN D:55 , GLN D:114 , LEU D:116	BINDING SITE FOR RESIDUE L0B C 1206
08	AC8	SOFTWARE	TYR D:91 , TRP D:145 , TYR D:184 , CYS D:186 , TYR D:191 , TRP E:53 , GLN E:55 , GLN E:114 , LEU E:116	BINDING SITE FOR RESIDUE L0B D 1205
09	AC9	SOFTWARE	PRO D:16 , ILE D:80 , SER D:81 , LEU D:83 , TRP D:84 , VAL D:85 , HOH D:2020	BINDING SITE FOR RESIDUE GOL D 1206
10	BC1	SOFTWARE	TRP A:53 , GLN A:114 , LEU A:116 , ARG D:23 , TYR E:91 , SER E:144 , TRP E:145 , CYS E:186 , CYS E:187 , TYR E:191	BINDING SITE FOR RESIDUE L0B E 1205
11	BC2	SOFTWARE	PRO E:16 , ILE E:80 , SER E:81 , LEU E:83 , TRP E:84 , VAL E:85	BINDING SITE FOR RESIDUE GOL E 1206
12	BC3	SOFTWARE	ASP D:17 , VAL D:18 , HOH D:2005 , GLN E:3 , TYR E:7 , LEU E:10 , TYR E:14 , LEU E:63 , VAL E:76 , SER E:77 , VAL E:78 , SER E:82	BINDING SITE FOR RESIDUE FHV E 1207
13	BC4	SOFTWARE	TYR A:30 , ASN A:108 , SER A:109 , SER A:110 , HIS A:112 , HOH A:2057 , ASP D:153 , ARG D:179 , GLU D:181 , HOH D:2034	Binding site for Poly-Saccharide residues NAG A 301 through BMA A 304 bound to ASN A 108
14	BC5	SOFTWARE	ASN B:108 , SER B:109 , SER B:110 , HIS B:112	Binding site for Poly-Saccharide residues NAG B 301 through NAG B 302 bound to ASN B 108
15	BC6	SOFTWARE	ASN C:108 , SER C:109 , SER C:110 , HIS C:112	Binding site for Poly-Saccharide residues NAG C 301 through NAG C 302 bound to ASN C 108
16	BC7	SOFTWARE	ASN D:108 , SER D:109 , SER D:110 , HIS D:112	Binding site for Poly-Saccharide residues NAG D 301 through NAG D 302 bound to ASN D 108
17	BC8	SOFTWARE	ASN E:108 , SER E:109 , SER E:110 , HIS E:112	Binding site for Poly-Saccharide residues NAG E 301 through NDG E 302 bound to ASN E 108

Asymmetric/Biological Unit

No.	Residues
1	A:125	-	A:138
2	A:186	-	A:187
3	B:125	-	B:138
4	B:186	-	B:187
5	C:125	-	C:138
6	C:186	-	C:187
7	D:125	-	D:138
8	D:186	-	D:187
9	E:125	-	E:138
10	E:186	-	E:187

(no "Cis Peptide Bond" information available for 5AFL)

(no "SAP(SNP)/Variant" information available for 5AFL)

(no "PROSITE Motif" information available for 5AFL)

(no "Exon" information available for 5AFL)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afl A   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

Chain B from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee..hhhhhh...eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afl B   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

Chain C from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afl C   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

Chain D from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhh....eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee..hhhhhh...eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afl D   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

Chain E from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee.hhhhh....eeeee.hhh....eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afl E   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5AFL)

(no "CATH Domain" information available for 5AFL)

(no "Pfam Domain" information available for 5AFL)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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5afh	ALPHA7-ACHBP IN COMPLEX WITH LOBELINE
5afj	ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 1
5afk	ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 2
5afm	ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 4
5afn	ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 5

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 24)

Sites (17, 17)

SS Bonds (10, 10)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (0, 0)

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Gene Ontology (35, 43)

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