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4ZFZ
Biol. Unit 4
Info
Asym.Unit (294 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RHESUS MACAQUE MHC CLASS I MOLECULE MAMU-B*098 COMPLEXED WITH MYRISTOYLATED 5-MER LIPOPEPTIDE DERIVED FROM SIV NEF PROTEIN
Authors
:
D. Morita, M. Sugita
Date
:
22 Apr 15 (Deposition) - 13 Jan 16 (Release) - 27 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.76
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Mhc, Lipopeptide, Antigen Presentation, Aids, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Morita, Y. Yamamoto, T. Mizutani, T. Ishikawa, J. Suzuki, T. Igarashi, N. Mori, T. Shiina, H. Inoko, H. Fujita, K. Iwai, Y. Tanaka B. Mikami, M. Sugita
Crystal Structure Of The N-Myristoylated Lipopeptide-Bound Mhc Class I Complex
Nat Commun V. 7 10356 2016
[
close entry info
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Hetero Components
(2, 19)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2as: 1,2-ETHANEDIOL (EDOas)
2at: 1,2-ETHANEDIOL (EDOat)
2au: 1,2-ETHANEDIOL (EDOau)
2av: 1,2-ETHANEDIOL (EDOav)
2aw: 1,2-ETHANEDIOL (EDOaw)
2ax: 1,2-ETHANEDIOL (EDOax)
2ay: 1,2-ETHANEDIOL (EDOay)
2az: 1,2-ETHANEDIOL (EDOaz)
2b: 1,2-ETHANEDIOL (EDOb)
2ba: 1,2-ETHANEDIOL (EDOba)
2bb: 1,2-ETHANEDIOL (EDObb)
2bc: 1,2-ETHANEDIOL (EDObc)
2bd: 1,2-ETHANEDIOL (EDObd)
2be: 1,2-ETHANEDIOL (EDObe)
2bf: 1,2-ETHANEDIOL (EDObf)
2bg: 1,2-ETHANEDIOL (EDObg)
2bh: 1,2-ETHANEDIOL (EDObh)
2bi: 1,2-ETHANEDIOL (EDObi)
2bj: 1,2-ETHANEDIOL (EDObj)
2bk: 1,2-ETHANEDIOL (EDObk)
2bl: 1,2-ETHANEDIOL (EDObl)
2bm: 1,2-ETHANEDIOL (EDObm)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: MYRISTIC ACID (MYRa)
3b: MYRISTIC ACID (MYRb)
3c: MYRISTIC ACID (MYRc)
3d: MYRISTIC ACID (MYRd)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
18
Ligand/Ion
1,2-ETHANEDIOL
3
MYR
1
Ligand/Ion
MYRISTIC ACID
4
TRS
-1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AE5 (SOFTWARE)
04: AE8 (SOFTWARE)
05: AF6 (SOFTWARE)
06: AJ4 (SOFTWARE)
07: AJ5 (SOFTWARE)
08: AJ6 (SOFTWARE)
09: AJ7 (SOFTWARE)
10: AJ8 (SOFTWARE)
11: AJ9 (SOFTWARE)
12: AK1 (SOFTWARE)
13: AK2 (SOFTWARE)
14: AK3 (SOFTWARE)
15: AK4 (SOFTWARE)
16: AK5 (SOFTWARE)
17: AK6 (SOFTWARE)
18: AK7 (SOFTWARE)
19: AK8 (SOFTWARE)
20: AK9 (SOFTWARE)
21: AL1 (SOFTWARE)
22: AL2 (SOFTWARE)
23: AL3 (SOFTWARE)
24: AL4 (SOFTWARE)
25: AL5 (SOFTWARE)
26: AL6 (SOFTWARE)
27: AL7 (SOFTWARE)
28: AL8 (SOFTWARE)
29: AM2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ALA A:0 , HIS A:3 , GLN A:180 , GLU J:138
binding site for residue ZN A 304
02
AC6
SOFTWARE
GLY A:1 , GLY A:104 , PRO A:105 , HOH A:472 , ASP J:137 , GLU J:138
binding site for residue EDO A 306
03
AE5
SOFTWARE
GLU B:36 , ZN B:102 , ASP D:196 , HIS D:197 , GLN J:54
binding site for residue EDO B 108
04
AE8
SOFTWARE
HIS D:191 , ALA D:199 , GLU D:254 , GLU J:58 , GLU J:61
binding site for residue ZN D 301
05
AF6
SOFTWARE
HOH D:405 , ASP J:196
binding site for residue EDO D 308
06
AJ4
SOFTWARE
GLU D:58 , GLU D:61 , HIS J:191 , ALA J:199 , GLU J:254
binding site for residue ZN J 301
07
AJ5
SOFTWARE
GLU A:138 , HOH A:401 , ALA J:0 , HIS J:3 , EDO J:314
binding site for residue ZN J 302
08
AJ6
SOFTWARE
TYR J:27 , ASP J:29 , ASP J:30 , HOH K:213
binding site for residue EDO J 303
09
AJ7
SOFTWARE
ASP J:122 , TYR J:123 , ILE J:124 , ALA J:125 , THR J:134 , ALA J:136 , HOH J:414 , HOH J:454
binding site for residue EDO J 304
10
AJ8
SOFTWARE
GLY J:207 , ASP J:238 , THR J:240 , GLN J:242 , HOH J:456 , ARG K:12
binding site for residue EDO J 305
11
AJ9
SOFTWARE
TRP J:204 , ARG J:234 , TRP J:244 , HOH J:448 , VAL K:9 , TYR K:10 , ASP K:96 , EDO K:107
binding site for residue EDO J 306
12
AK1
SOFTWARE
ASP A:106 , GLN J:87 , TYR J:118 , ASP J:119 , ARG J:121 , HOH J:426 , HOH J:468
binding site for residue EDO J 307
13
AK2
SOFTWARE
TYR J:7 , TYR J:159 , SER J:167 , TYR J:171 , HOH J:441
binding site for residue EDO J 308
14
AK3
SOFTWARE
ALA J:0 , SER J:2 , ASP J:29 , GLU J:264 , EDO J:310 , HOH J:432
binding site for residue EDO J 309
15
AK4
SOFTWARE
HOH A:401 , ALA J:0 , HIS J:3 , ASP J:29 , LEU J:179 , ARG J:181 , GLU J:264 , EDO J:309
binding site for residue EDO J 310
16
AK5
SOFTWARE
ALA J:136 , ASP J:137 , HOH J:415 , HOH J:435
binding site for residue EDO J 311
17
AK6
SOFTWARE
ARG J:48 , HOH J:520
binding site for residue EDO J 312
18
AK7
SOFTWARE
GLN J:115 , ASP J:122 , LYS K:58
binding site for residue EDO J 313
19
AK8
SOFTWARE
GLU A:138 , HOH A:401 , ALA J:0 , HIS J:3 , GLN J:180 , ZN J:302
binding site for residue EDO J 314
20
AK9
SOFTWARE
ARG J:75
binding site for residue CL J 315
21
AL1
SOFTWARE
HIS J:192 , HOH J:534 , ASP K:98
binding site for residue ZN K 101
22
AL2
SOFTWARE
HIS K:51 , EDO K:108 , HOH K:234 , HOH K:238
binding site for residue ZN K 102
23
AL3
SOFTWARE
MET J:98 , SER K:57 , LYS K:58 , TRP K:60 , HOH K:214
binding site for residue EDO K 103
24
AL4
SOFTWARE
ARG J:234 , GLN J:242 , TYR K:10 , SER K:11 , HIS K:13 , PRO K:14 , MET K:99 , HOH K:221
binding site for residue EDO K 104
25
AL5
SOFTWARE
ARG J:21 , SER K:33 , ASP K:34
binding site for residue EDO K 105
26
AL6
SOFTWARE
GLU K:36 , ASP K:38 , ARG K:81 , ASN K:83 , PRO K:90
binding site for residue EDO K 106
27
AL7
SOFTWARE
ARG J:202 , TRP J:204 , EDO J:306 , ASP K:96 , ASP K:98 , MET K:99
binding site for residue EDO K 107
28
AL8
SOFTWARE
HIS K:51 , ZN K:102
binding site for residue EDO K 108
29
AM2
SOFTWARE
ASP J:69 , THR J:73 , GLY L:3 , ALA L:4
binding site for Di-peptide MYR L 101 and GLY L 2
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (294 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
Biol.Unit 2 (76 KB)
Header - Biol.Unit 2
Biol.Unit 3 (77 KB)
Header - Biol.Unit 3
Biol.Unit 4 (77 KB)
Header - Biol.Unit 4
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