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4ZFZ
Biol. Unit 2
Info
Asym.Unit (294 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RHESUS MACAQUE MHC CLASS I MOLECULE MAMU-B*098 COMPLEXED WITH MYRISTOYLATED 5-MER LIPOPEPTIDE DERIVED FROM SIV NEF PROTEIN
Authors
:
D. Morita, M. Sugita
Date
:
22 Apr 15 (Deposition) - 13 Jan 16 (Release) - 27 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.76
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Mhc, Lipopeptide, Antigen Presentation, Aids, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Morita, Y. Yamamoto, T. Mizutani, T. Ishikawa, J. Suzuki, T. Igarashi, N. Mori, T. Shiina, H. Inoko, H. Fujita, K. Iwai, Y. Tanaka B. Mikami, M. Sugita
Crystal Structure Of The N-Myristoylated Lipopeptide-Bound Mhc Class I Complex
Nat Commun V. 7 10356 2016
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2as: 1,2-ETHANEDIOL (EDOas)
2at: 1,2-ETHANEDIOL (EDOat)
2au: 1,2-ETHANEDIOL (EDOau)
2av: 1,2-ETHANEDIOL (EDOav)
2aw: 1,2-ETHANEDIOL (EDOaw)
2ax: 1,2-ETHANEDIOL (EDOax)
2ay: 1,2-ETHANEDIOL (EDOay)
2az: 1,2-ETHANEDIOL (EDOaz)
2b: 1,2-ETHANEDIOL (EDOb)
2ba: 1,2-ETHANEDIOL (EDOba)
2bb: 1,2-ETHANEDIOL (EDObb)
2bc: 1,2-ETHANEDIOL (EDObc)
2bd: 1,2-ETHANEDIOL (EDObd)
2be: 1,2-ETHANEDIOL (EDObe)
2bf: 1,2-ETHANEDIOL (EDObf)
2bg: 1,2-ETHANEDIOL (EDObg)
2bh: 1,2-ETHANEDIOL (EDObh)
2bi: 1,2-ETHANEDIOL (EDObi)
2bj: 1,2-ETHANEDIOL (EDObj)
2bk: 1,2-ETHANEDIOL (EDObk)
2bl: 1,2-ETHANEDIOL (EDObl)
2bm: 1,2-ETHANEDIOL (EDObm)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: MYRISTIC ACID (MYRa)
3b: MYRISTIC ACID (MYRb)
3c: MYRISTIC ACID (MYRc)
3d: MYRISTIC ACID (MYRd)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
3
MYR
1
Ligand/Ion
MYRISTIC ACID
4
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AD8 (SOFTWARE)
02: AE5 (SOFTWARE)
03: AE8 (SOFTWARE)
04: AE9 (SOFTWARE)
05: AF1 (SOFTWARE)
06: AF2 (SOFTWARE)
07: AF3 (SOFTWARE)
08: AF4 (SOFTWARE)
09: AF5 (SOFTWARE)
10: AF6 (SOFTWARE)
11: AF7 (SOFTWARE)
12: AF8 (SOFTWARE)
13: AF9 (SOFTWARE)
14: AG1 (SOFTWARE)
15: AG2 (SOFTWARE)
16: AG3 (SOFTWARE)
17: AG4 (SOFTWARE)
18: AG5 (SOFTWARE)
19: AG6 (SOFTWARE)
20: AG7 (SOFTWARE)
21: AG8 (SOFTWARE)
22: AG9 (SOFTWARE)
23: AH1 (SOFTWARE)
24: AH3 (SOFTWARE)
25: AH7 (SOFTWARE)
26: AI3 (SOFTWARE)
27: AI5 (SOFTWARE)
28: AJ4 (SOFTWARE)
29: AL9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AD8
SOFTWARE
GLU B:36 , EDO B:108 , HOH B:211 , HIS D:197
binding site for residue ZN B 102
02
AE5
SOFTWARE
GLU B:36 , ZN B:102 , ASP D:196 , HIS D:197 , GLN J:54
binding site for residue EDO B 108
03
AE8
SOFTWARE
HIS D:191 , ALA D:199 , GLU D:254 , GLU J:58 , GLU J:61
binding site for residue ZN D 301
04
AE9
SOFTWARE
HIS D:192 , ASP E:98 , HOH E:255
binding site for residue ZN D 302
05
AF1
SOFTWARE
ALA D:0 , HIS D:3 , GLN D:180 , GLU G:138
binding site for residue ZN D 303
06
AF2
SOFTWARE
ALA D:0 , LEU D:179 , GLN D:180 , GLU D:264 , TRS D:312 , HOH D:413
binding site for residue EDO D 304
07
AF3
SOFTWARE
TYR D:27 , ASP D:29 , ASP D:30 , HOH D:464
binding site for residue EDO D 305
08
AF4
SOFTWARE
TYR D:7 , GLN D:63 , TYR D:159 , GLU D:163 , SER D:167 , TYR D:171 , MYR F:101
binding site for residue EDO D 306
09
AF5
SOFTWARE
GLY D:237 , EDO D:309 , HOH D:460 , SER E:52
binding site for residue EDO D 307
10
AF6
SOFTWARE
HOH D:405 , ASP J:196
binding site for residue EDO D 308
11
AF7
SOFTWARE
TYR D:27 , PRO D:235 , EDO D:307 , SER E:52 , TYR E:63 , HOH E:212
binding site for residue EDO D 309
12
AF8
SOFTWARE
PRO D:47 , ARG D:48
binding site for residue EDO D 310
13
AF9
SOFTWARE
ARG D:6 , TYR D:113 , EDO E:103
binding site for residue EDO D 311
14
AG1
SOFTWARE
ALA D:0 , SER D:2 , HIS D:3 , SER D:4 , ASP D:29 , PRO D:210 , GLU D:264 , EDO D:304 , HOH D:415 , HOH D:469 , HOH D:511
binding site for residue TRS D 312
15
AG2
SOFTWARE
HIS E:51 , EDO E:108 , HOH E:256
binding site for residue ZN E 101
16
AG3
SOFTWARE
HIS A:197 , GLU E:36 , EDO E:109 , HOH E:202 , HOH E:222
binding site for residue ZN E 102
17
AG4
SOFTWARE
EDO D:311 , SER E:57 , LYS E:58 , TRP E:60 , HOH E:231
binding site for residue EDO E 103
18
AG5
SOFTWARE
TRP D:204 , LEU D:206 , ARG D:234 , GLN D:242 , TYR E:10 , SER E:11 , HIS E:13 , PRO E:14 , EDO E:105
binding site for residue EDO E 104
19
AG6
SOFTWARE
MET E:99 , EDO E:104
binding site for residue EDO E 105
20
AG7
SOFTWARE
ARG D:21 , SER E:33 , ASP E:34 , EDO E:107
binding site for residue EDO E 106
21
AG8
SOFTWARE
ILE D:23 , HIS E:51 , SER E:52 , ASP E:53 , LEU E:54 , EDO E:106 , EDO E:108
binding site for residue EDO E 107
22
AG9
SOFTWARE
ARG D:21 , HIS E:51 , ZN E:101 , EDO E:107 , HOH E:241
binding site for residue EDO E 108
23
AH1
SOFTWARE
HIS A:197 , GLU E:36 , ZN E:102 , HOH E:222 , GLN G:54 , GLU G:55 , GLY G:56
binding site for residue EDO E 109
24
AH3
SOFTWARE
GLU D:138 , ALA G:0 , HIS G:3 , EDO G:311 , HOH G:409
binding site for residue ZN G 302
25
AH7
SOFTWARE
GLY D:1 , GLY D:104 , PRO D:105 , ASP G:137 , GLU G:138 , HOH G:444 , HOH G:459
binding site for residue EDO G 306
26
AI3
SOFTWARE
GLU D:138 , ALA G:0 , HIS G:3 , GLN G:180 , ZN G:302 , HOH G:409
binding site for residue EDO G 311
27
AI5
SOFTWARE
ASP D:106 , GLN G:87 , TYR G:118 , ASP G:119
binding site for residue EDO G 313
28
AJ4
SOFTWARE
GLU D:58 , GLU D:61 , HIS J:191 , ALA J:199 , GLU J:254
binding site for residue ZN J 301
29
AL9
SOFTWARE
GLN D:63 , ARG D:66 , VAL D:67 , ASP D:69 , ALA D:70 , THR D:73 , PHE D:74 , TYR D:114 , TRP D:156 , TYR D:159 , EDO D:306 , HOH D:410 , GLY F:3 , ALA F:4
binding site for Di-peptide MYR F 101 and GLY F 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asym.Unit (294 KB)
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