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4ZFZ
Biol. Unit 1
Info
Asym.Unit (294 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (77 KB)
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Title
:
CRYSTAL STRUCTURE OF RHESUS MACAQUE MHC CLASS I MOLECULE MAMU-B*098 COMPLEXED WITH MYRISTOYLATED 5-MER LIPOPEPTIDE DERIVED FROM SIV NEF PROTEIN
Authors
:
D. Morita, M. Sugita
Date
:
22 Apr 15 (Deposition) - 13 Jan 16 (Release) - 27 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.76
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Mhc, Lipopeptide, Antigen Presentation, Aids, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Morita, Y. Yamamoto, T. Mizutani, T. Ishikawa, J. Suzuki, T. Igarashi, N. Mori, T. Shiina, H. Inoko, H. Fujita, K. Iwai, Y. Tanaka B. Mikami, M. Sugita
Crystal Structure Of The N-Myristoylated Lipopeptide-Bound Mhc Class I Complex
Nat Commun V. 7 10356 2016
[
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2as: 1,2-ETHANEDIOL (EDOas)
2at: 1,2-ETHANEDIOL (EDOat)
2au: 1,2-ETHANEDIOL (EDOau)
2av: 1,2-ETHANEDIOL (EDOav)
2aw: 1,2-ETHANEDIOL (EDOaw)
2ax: 1,2-ETHANEDIOL (EDOax)
2ay: 1,2-ETHANEDIOL (EDOay)
2az: 1,2-ETHANEDIOL (EDOaz)
2b: 1,2-ETHANEDIOL (EDOb)
2ba: 1,2-ETHANEDIOL (EDOba)
2bb: 1,2-ETHANEDIOL (EDObb)
2bc: 1,2-ETHANEDIOL (EDObc)
2bd: 1,2-ETHANEDIOL (EDObd)
2be: 1,2-ETHANEDIOL (EDObe)
2bf: 1,2-ETHANEDIOL (EDObf)
2bg: 1,2-ETHANEDIOL (EDObg)
2bh: 1,2-ETHANEDIOL (EDObh)
2bi: 1,2-ETHANEDIOL (EDObi)
2bj: 1,2-ETHANEDIOL (EDObj)
2bk: 1,2-ETHANEDIOL (EDObk)
2bl: 1,2-ETHANEDIOL (EDObl)
2bm: 1,2-ETHANEDIOL (EDObm)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: MYRISTIC ACID (MYRa)
3b: MYRISTIC ACID (MYRb)
3c: MYRISTIC ACID (MYRc)
3d: MYRISTIC ACID (MYRd)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
3
MYR
1
Ligand/Ion
MYRISTIC ACID
4
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AG3 (SOFTWARE)
27: AH1 (SOFTWARE)
28: AJ5 (SOFTWARE)
29: AK1 (SOFTWARE)
30: AK4 (SOFTWARE)
31: AK8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:191 , ALA A:199 , GLU A:254 , GLU G:58 , GLU G:61
binding site for residue ZN A 301
02
AC2
SOFTWARE
GLU A:58 , GLU A:61 , HIS G:191 , ALA G:199 , GLU G:254
binding site for residue ZN A 302
03
AC3
SOFTWARE
HIS A:192 , ASP B:98 , HOH B:253
binding site for residue ZN A 303
04
AC4
SOFTWARE
ALA A:0 , HIS A:3 , GLN A:180 , GLU J:138
binding site for residue ZN A 304
05
AC5
SOFTWARE
ALA A:0 , HIS A:3 , LEU A:179 , GLN A:180 , GLU A:264 , TRS A:314 , HOH A:409
binding site for residue EDO A 305
06
AC6
SOFTWARE
GLY A:1 , GLY A:104 , PRO A:105 , HOH A:472 , ASP J:137 , GLU J:138
binding site for residue EDO A 306
07
AC7
SOFTWARE
TYR A:7 , GLN A:63 , TYR A:159 , GLU A:163 , SER A:167 , TYR A:171 , MYR C:101
binding site for residue EDO A 307
08
AC8
SOFTWARE
PHE A:8 , ASP A:30 , HOH A:479
binding site for residue EDO A 308
09
AC9
SOFTWARE
ARG A:35 , GLU A:46 , PRO A:47 , ARG A:48
binding site for residue EDO A 309
10
AD1
SOFTWARE
ARG A:108 , LEU A:109 , GLU A:161 , LEU A:165 , HOH A:502
binding site for residue EDO A 310
11
AD2
SOFTWARE
GLY A:237 , HOH A:403 , HOH A:461 , SER B:52
binding site for residue EDO A 311
12
AD3
SOFTWARE
ARG A:6 , MET A:98 , TYR A:113 , EDO B:103
binding site for residue EDO A 312
13
AD4
SOFTWARE
PRO A:15 , GLY A:16 , ARG A:17 , GLY A:18
binding site for residue EDO A 313
14
AD5
SOFTWARE
ALA A:0 , SER A:2 , HIS A:3 , SER A:4 , ASP A:29 , PRO A:210 , GLU A:264 , EDO A:305 , HOH A:456 , HOH A:467
binding site for residue TRS A 314
15
AD6
SOFTWARE
ARG A:75
binding site for residue CL A 315
16
AD7
SOFTWARE
HIS B:51 , EDO B:109 , HOH B:257
binding site for residue ZN B 101
17
AD8
SOFTWARE
GLU B:36 , EDO B:108 , HOH B:211 , HIS D:197
binding site for residue ZN B 102
18
AD9
SOFTWARE
PHE A:8 , MET A:98 , EDO A:312 , SER B:57 , LYS B:58 , TRP B:60 , HOH B:216
binding site for residue EDO B 103
19
AE1
SOFTWARE
ARG A:21 , ILE A:23 , SER B:33 , ASP B:34 , HOH B:202
binding site for residue EDO B 104
20
AE2
SOFTWARE
GLN B:8 , VAL B:9 , LYS B:94 , ASP B:96 , HOH B:242
binding site for residue EDO B 105
21
AE3
SOFTWARE
TRP A:204 , MET B:99 , EDO B:107
binding site for residue EDO B 106
22
AE4
SOFTWARE
TRP A:204 , LEU A:206 , ARG A:234 , GLN A:242 , TYR B:10 , SER B:11 , HIS B:13 , PRO B:14 , EDO B:106
binding site for residue EDO B 107
23
AE5
SOFTWARE
GLU B:36 , ZN B:102 , ASP D:196 , HIS D:197 , GLN J:54
binding site for residue EDO B 108
24
AE6
SOFTWARE
ARG A:21 , HIS B:51 , ZN B:101 , HOH B:234
binding site for residue EDO B 109
25
AE7
SOFTWARE
GLN A:63 , ARG A:66 , ALA A:70 , PHE A:74 , TYR A:114 , TYR A:159 , EDO A:307 , HOH A:417 , HOH A:438 , GLY C:2
binding site for residue MYR C 101
26
AG3
SOFTWARE
HIS A:197 , GLU E:36 , EDO E:109 , HOH E:202 , HOH E:222
binding site for residue ZN E 102
27
AH1
SOFTWARE
HIS A:197 , GLU E:36 , ZN E:102 , HOH E:222 , GLN G:54 , GLU G:55 , GLY G:56
binding site for residue EDO E 109
28
AJ5
SOFTWARE
GLU A:138 , HOH A:401 , ALA J:0 , HIS J:3 , EDO J:314
binding site for residue ZN J 302
29
AK1
SOFTWARE
ASP A:106 , GLN J:87 , TYR J:118 , ASP J:119 , ARG J:121 , HOH J:426 , HOH J:468
binding site for residue EDO J 307
30
AK4
SOFTWARE
HOH A:401 , ALA J:0 , HIS J:3 , ASP J:29 , LEU J:179 , ARG J:181 , GLU J:264 , EDO J:309
binding site for residue EDO J 310
31
AK8
SOFTWARE
GLU A:138 , HOH A:401 , ALA J:0 , HIS J:3 , GLN J:180 , ZN J:302
binding site for residue EDO J 314
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (294 KB)
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Biol.Unit 1 (77 KB)
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Biol.Unit 3 (77 KB)
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