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4YFL
Biol. Unit 1
Info
Asym.Unit (780 KB)
Biol.Unit 1 (389 KB)
Biol.Unit 2 (387 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VH1-46 GERMLINE-DERIVED CD4-BINDING SITE-DIRECTED ANTIBODY 1B2530 IN COMPLEX WITH HIV-1 CLADE A/E 93TH057 GP120
Authors
:
P. Acharya, T. Zhou, S. Moquin, P. D. Kwong
Date
:
25 Feb 15 (Deposition) - 03 Jun 15 (Release) - 17 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.39
Chains
:
Asym. Unit : E,F,G,H,I,L
Biol. Unit 1: G,H,L (1x)
Biol. Unit 2: E,F,I (1x)
Keywords
:
Hiv-1 Cd4 Binding Site, Broadly Neutralizing Antibody, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Zhou, R. M. Lynch, L. Chen, P. Acharya, X. Wu, N. A. Doria-Rose, M. G. Joyce, D. Lingwood, C. Soto, R. T. Bailer, M. J. Ernandes, R. Kong, N. S. Longo, M. K. Louder, K. Mckee, S. O'Dell, S. D. Schmidt, L. Tran, Z. Yang, A. Druz, T. S. Luongo, S. Moquin, S. Srivatsan, Y. Yang, B. Zhang, A. Zheng, M. Pancera, T. Kirys, I. S. Georgiev, T. Gindin, H. P. Peng, A. S. Yang, J. C. Mullikin, M. D. Gray, L. Stamatatos, D. R. Burton, W. C. Koff, M. S. Cohen, B. F. Haynes, J. P. Casazza, M. Connors, D. Corti, A. Lanzavecchia, Q. J. Sattentau, R. A. Weiss, A. P. West, P. J. Bjorkman, J. F. Scheid, M. C. Nussenzweig, L. Shapiro, J. R. Mascola, P. D. Kwong
Structural Repertoire Of Hiv-1-Neutralizing Antibodies Targeting The Cd4 Supersite In 14 Donors.
Cell V. 161 1280 2015
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
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No.
Name
Count
Type
Full Name
1
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(9, 9)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AD2 (SOFTWARE)
5: AD3 (SOFTWARE)
6: AD4 (SOFTWARE)
7: AD5 (SOFTWARE)
8: AD6 (SOFTWARE)
9: AD7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
ASN E:295 , THR E:297 , LYS E:442 , ASN E:444 , ASN G:80
binding site for Mono-Saccharide NAG E 506 bound to ASN E 295
2
AC7
SOFTWARE
ASN E:334 , LYS E:337 , THR E:413 , THR G:77
binding site for Mono-Saccharide NAG E 507 bound to ASN E 334
3
AC8
SOFTWARE
LEU E:369 , MET E:373 , ASN E:386 , THR E:388 , GLN G:114 , GLN G:117
binding site for Mono-Saccharide NAG E 508 bound to ASN E 386
4
AD2
SOFTWARE
GLU G:83 , ASN G:229 , ASN G:241 , SER G:243
binding site for Mono-Saccharide NAG G 501 bound to ASN G 241
5
AD3
SOFTWARE
LYS G:252 , VAL G:254 , LEU G:261 , ASN G:262 , VAL G:446 , SER G:447
binding site for Mono-Saccharide NAG G 502 bound to ASN G 262
6
AD4
SOFTWARE
ILE G:270 , ASN G:289 , GLN G:344
binding site for Mono-Saccharide NAG G 503 bound to ASN G 289
7
AD5
SOFTWARE
ASN G:295 , THR G:297
binding site for Mono-Saccharide NAG G 504 bound to ASN G 295
8
AD6
SOFTWARE
ASN G:334 , LYS G:337 , THR G:413
binding site for Mono-Saccharide NAG G 505 bound to ASN G 334
9
AD7
SOFTWARE
ASN G:392 , THR G:394 , MET G:407 , LYS G:408 , GLY G:409 , CYS G:410
binding site for Mono-Saccharide NAG G 506 bound to ASN G 392
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (780 KB)
Header - Asym.Unit
Biol.Unit 1 (389 KB)
Header - Biol.Unit 1
Biol.Unit 2 (387 KB)
Header - Biol.Unit 2
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