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4Y1N
Biol. Unit 2
Info
Asym.Unit (481 KB)
Biol.Unit 1 (232 KB)
Biol.Unit 2 (241 KB)
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(1)
Title
:
OCEANOBACILLUS IHEYENSIS GROUP II INTRON DOMAIN 1 WITH IRIDIUM HEXAMINE
Authors
:
C. Zhao, K. R. Rajashankar, M. Marcia, A. M. Pyle
Date
:
08 Feb 15 (Deposition) - 14 Oct 15 (Release) - 02 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Group Ii Intron, Domain 1, Rna, Iridium Hexamine, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Zhao, K. R. Rajashankar, M. Marcia, A. M. Pyle
Crystal Structure Of Group Ii Intron Domain 1 Reveals A Template For Rna Assembly.
Nat. Chem. Biol. V. 11 967 2015
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Hetero Components
(1, 15)
Info
All Hetero Components
1a: IRIDIUM HEXAMMINE ION (IRIa)
1aa: IRIDIUM HEXAMMINE ION (IRIaa)
1ab: IRIDIUM HEXAMMINE ION (IRIab)
1b: IRIDIUM HEXAMMINE ION (IRIb)
1c: IRIDIUM HEXAMMINE ION (IRIc)
1d: IRIDIUM HEXAMMINE ION (IRId)
1e: IRIDIUM HEXAMMINE ION (IRIe)
1f: IRIDIUM HEXAMMINE ION (IRIf)
1g: IRIDIUM HEXAMMINE ION (IRIg)
1h: IRIDIUM HEXAMMINE ION (IRIh)
1i: IRIDIUM HEXAMMINE ION (IRIi)
1j: IRIDIUM HEXAMMINE ION (IRIj)
1k: IRIDIUM HEXAMMINE ION (IRIk)
1l: IRIDIUM HEXAMMINE ION (IRIl)
1m: IRIDIUM HEXAMMINE ION (IRIm)
1n: IRIDIUM HEXAMMINE ION (IRIn)
1o: IRIDIUM HEXAMMINE ION (IRIo)
1p: IRIDIUM HEXAMMINE ION (IRIp)
1q: IRIDIUM HEXAMMINE ION (IRIq)
1r: IRIDIUM HEXAMMINE ION (IRIr)
1s: IRIDIUM HEXAMMINE ION (IRIs)
1t: IRIDIUM HEXAMMINE ION (IRIt)
1u: IRIDIUM HEXAMMINE ION (IRIu)
1v: IRIDIUM HEXAMMINE ION (IRIv)
1w: IRIDIUM HEXAMMINE ION (IRIw)
1x: IRIDIUM HEXAMMINE ION (IRIx)
1y: IRIDIUM HEXAMMINE ION (IRIy)
1z: IRIDIUM HEXAMMINE ION (IRIz)
2a: POTASSIUM ION (Ka)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
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Label:
No.
Name
Count
Type
Full Name
1
IRI
15
Ligand/Ion
IRIDIUM HEXAMMINE ION
2
K
-1
Ligand/Ion
POTASSIUM ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(20, 20)
Info
All Sites
01: AD8 (SOFTWARE)
02: AD9 (SOFTWARE)
03: AE1 (SOFTWARE)
04: AE2 (SOFTWARE)
05: AE3 (SOFTWARE)
06: AE4 (SOFTWARE)
07: AE5 (SOFTWARE)
08: AE6 (SOFTWARE)
09: AE7 (SOFTWARE)
10: AE8 (SOFTWARE)
11: AE9 (SOFTWARE)
12: AF1 (SOFTWARE)
13: AF2 (SOFTWARE)
14: AF3 (SOFTWARE)
15: AF4 (SOFTWARE)
16: AF5 (SOFTWARE)
17: AF6 (SOFTWARE)
18: AF7 (SOFTWARE)
19: AF8 (SOFTWARE)
20: AF9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AD8
SOFTWARE
A A:167 , U B:31 , G B:32 , G B:34
binding site for residue IRI B 401
02
AD9
SOFTWARE
A B:12 , G B:14 , G B:15 , G B:16 , U B:255 , U B:256
binding site for residue IRI B 402
03
AE1
SOFTWARE
C B:8 , G B:9 , G B:10 , U B:259 , A B:260
binding site for residue IRI B 403
04
AE2
SOFTWARE
C B:38 , C B:39 , G B:243 , G B:244 , IRI B:405
binding site for residue IRI B 404
05
AE3
SOFTWARE
A B:241 , G B:242 , G B:243 , G B:244 , IRI B:404
binding site for residue IRI B 405
06
AE4
SOFTWARE
C A:23 , C B:76 , A B:77
binding site for residue IRI B 406
07
AE5
SOFTWARE
G B:79 , G B:80 , G B:81 , A B:99 , A B:100 , U B:101 , C B:102
binding site for residue IRI B 407
08
AE6
SOFTWARE
A B:163 , U B:164 , G B:212 , G B:213 , U B:214
binding site for residue IRI B 408
09
AE7
SOFTWARE
A B:159 , G B:160 , U B:211
binding site for residue IRI B 409
10
AE8
SOFTWARE
G B:264 , G B:265 , G B:266
binding site for residue IRI B 410
11
AE9
SOFTWARE
U B:31 , G B:32 , A B:35
binding site for residue IRI B 411
12
AF1
SOFTWARE
A B:49 , G B:52 , C B:53 , A B:54 , G B:169 , G B:170
binding site for residue IRI B 412
13
AF2
SOFTWARE
G B:64 , U B:66 , A B:120 , IRI B:414
binding site for residue IRI B 413
14
AF3
SOFTWARE
C B:119 , A B:120 , G B:173 , A B:174 , G B:239 , A B:240 , IRI B:413
binding site for residue IRI B 414
15
AF4
SOFTWARE
G B:142 , A B:144 , C B:145 , U B:146
binding site for residue IRI B 415
16
AF5
SOFTWARE
U B:65 , U B:66 , A B:120 , MG B:417
binding site for residue MG B 416
17
AF6
SOFTWARE
A B:67 , G B:68 , MG B:416
binding site for residue MG B 417
18
AF7
SOFTWARE
A B:25
binding site for residue MG B 418
19
AF8
SOFTWARE
G B:114
binding site for residue MG B 419
20
AF9
SOFTWARE
A B:154 , G B:155
binding site for residue MG B 420
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Chain B
Asymmetric Unit 1
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Asym.Unit (481 KB)
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