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4Y1I
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (178 KB)
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(1)
Title
:
LACTOCOCCUS LACTIS YYBP-YKOY MN RIBOSWITCH BOUND TO MN2+
Authors
:
I. R. Price, A. Ke
Date
:
07 Feb 15 (Deposition) - 08 Apr 15 (Release) - 20 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Riboswitch, Manganese-Binding, Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. R. Price, A. Gaballa, F. Ding, J. D. Helmann, A. Ke
Mn(2+)-Sensing Mechanisms Of Yybp-Ykoy Orphan Riboswitches.
Mol. Cell V. 57 1110 2015
[
close entry info
]
Hetero Components
(4, 49)
Info
All Hetero Components
1a: BARIUM ION (BAa)
1b: BARIUM ION (BAb)
1c: BARIUM ION (BAc)
1d: BARIUM ION (BAd)
1e: BARIUM ION (BAe)
1f: BARIUM ION (BAf)
1g: BARIUM ION (BAg)
1h: BARIUM ION (BAh)
1i: BARIUM ION (BAi)
1j: BARIUM ION (BAj)
1k: BARIUM ION (BAk)
1l: BARIUM ION (BAl)
1m: BARIUM ION (BAm)
1n: BARIUM ION (BAn)
1o: BARIUM ION (BAo)
1p: BARIUM ION (BAp)
1q: BARIUM ION (BAq)
1r: BARIUM ION (BAr)
1s: BARIUM ION (BAs)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
3o: MAGNESIUM ION (MGo)
3p: MAGNESIUM ION (MGp)
3q: MAGNESIUM ION (MGq)
3r: MAGNESIUM ION (MGr)
3s: MAGNESIUM ION (MGs)
3t: MAGNESIUM ION (MGt)
3u: MAGNESIUM ION (MGu)
3v: MAGNESIUM ION (MGv)
3w: MAGNESIUM ION (MGw)
3x: MAGNESIUM ION (MGx)
3y: MAGNESIUM ION (MGy)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BA
19
Ligand/Ion
BARIUM ION
2
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
25
Ligand/Ion
MAGNESIUM ION
4
MN
3
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(44, 44)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
A A:3 , C A:101 , GTP A:226 , C B:101 , C B:102
binding site for residue GTP A 201
02
AC2
SOFTWARE
U A:64
binding site for residue MG A 203
03
AC3
SOFTWARE
A A:3 , HOH A:320
binding site for residue MG A 204
04
AC4
SOFTWARE
C A:31 , G A:62
binding site for residue MG A 205
05
AC5
SOFTWARE
G A:21 , A A:22
binding site for residue MG A 206
06
AC6
SOFTWARE
G A:8 , G A:9 , A A:10 , U A:39 , C A:45 , HOH A:310
binding site for residue MG A 207
07
AC7
SOFTWARE
C A:59 , C A:60 , U B:43 , G B:94
binding site for residue MG A 208
08
AC8
SOFTWARE
C A:45
binding site for residue MG A 209
09
AC9
SOFTWARE
U A:68
binding site for residue MG A 210
10
AD1
SOFTWARE
U A:100 , GTP A:226
binding site for residue MG A 211
11
AD2
SOFTWARE
G A:9 , U A:43 , G A:94 , HOH A:319
binding site for residue MG A 212
12
AD3
SOFTWARE
G A:35 , U A:36 , G A:61 , G A:62
binding site for residue BA A 213
13
AD4
SOFTWARE
G A:6 , HOH A:309
binding site for residue BA A 214
14
AD5
SOFTWARE
G A:51
binding site for residue BA A 215
15
AD6
SOFTWARE
G A:21
binding site for residue BA A 216
16
AD7
SOFTWARE
G A:21 , HOH A:321
binding site for residue BA A 217
17
AD8
SOFTWARE
A A:79
binding site for residue BA A 218
18
AD9
SOFTWARE
G A:8
binding site for residue BA A 220
19
AE1
SOFTWARE
U A:39 , C A:40
binding site for residue BA A 221
20
AE2
SOFTWARE
A A:13
binding site for residue BA A 222
21
AE3
SOFTWARE
G A:46
binding site for residue BA A 223
22
AE4
SOFTWARE
G A:9 , U A:39 , C A:40 , A A:41 , U A:44 , C A:45
binding site for residue MN A 224
23
AE5
SOFTWARE
G A:81 , HOH A:314
binding site for residue MN A 225
24
AE6
SOFTWARE
C A:101 , C A:102 , GTP A:201 , MG A:211 , A B:3 , C B:101
binding site for residue GTP A 226
25
AE7
SOFTWARE
A B:13 , HOH B:306 , HOH B:307 , HOH B:308
binding site for residue MG B 201
26
AE8
SOFTWARE
A B:71 , U B:84 , G B:85
binding site for residue MG B 202
27
AE9
SOFTWARE
G B:16 , HOH B:309 , HOH B:332
binding site for residue MG B 203
28
AF1
SOFTWARE
G B:48
binding site for residue MG B 204
29
AF2
SOFTWARE
A B:23 , A B:24
binding site for residue MG B 205
30
AF3
SOFTWARE
G B:8 , G B:9 , A B:10 , U B:39 , C B:45 , HOH B:311
binding site for residue MG B 206
31
AF4
SOFTWARE
U B:68
binding site for residue MG B 207
32
AF5
SOFTWARE
A B:33
binding site for residue MG B 208
33
AF6
SOFTWARE
HOH B:322
binding site for residue MG B 209
34
AF7
SOFTWARE
HOH B:325
binding site for residue MG B 210
35
AF8
SOFTWARE
C B:31 , G B:62
binding site for residue MG B 211
36
AF9
SOFTWARE
G B:8
binding site for residue MG B 212
37
AG1
SOFTWARE
A B:33
binding site for residue MG B 213
38
AG2
SOFTWARE
U B:43
binding site for residue MG B 214
39
AG3
SOFTWARE
G B:21
binding site for residue BA B 215
40
AG4
SOFTWARE
G B:35 , U B:36 , G B:61 , G B:62
binding site for residue BA B 217
41
AG5
SOFTWARE
HOH B:305
binding site for residue BA B 218
42
AG6
SOFTWARE
G B:8
binding site for residue BA B 219
43
AG7
SOFTWARE
G B:19 , G B:21
binding site for residue BA B 221
44
AG8
SOFTWARE
G B:9 , U B:39 , C B:40 , A B:41 , U B:44 , C B:45
binding site for residue MN B 223
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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SCOP Domains
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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