PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4XWL
Asym. Unit
Info
Asym.Unit (231 KB)
Biol.Unit 1 (223 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CATALYTIC DOMAIN OF CLOSTRIDIUM CELLULOVORANS EXGS
Authors
:
Y. -C. Liaw
Date
:
29 Jan 15 (Deposition) - 28 Oct 15 (Release) - 28 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. -C. Tsai, I. Amiraslanov, H. R. Chen, Y. W. Chen, H. L. Lee, P. H. Liang Y. -C. Liaw
Structures Of Exoglucanase From Clostridium Cellulovorans: Cellotetraose Binding And Cleavage
Acta Crystallogr. , Sect. F V. 71 1264 2015
[
close entry info
]
Hetero Components
(8, 23)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: CALCIUM ION (CAa)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
4a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
6a: TETRAETHYLENE GLYCOL (PG4a)
6b: TETRAETHYLENE GLYCOL (PG4b)
7a: TRIETHYLENE GLYCOL (PGEa)
7b: TRIETHYLENE GLYCOL (PGEb)
7c: TRIETHYLENE GLYCOL (PGEc)
7d: TRIETHYLENE GLYCOL (PGEd)
8a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CA
1
Ligand/Ion
CALCIUM ION
3
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
4
P33
1
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
5
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
7
PGE
4
Ligand/Ion
TRIETHYLENE GLYCOL
8
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:442 , LYS A:451 , GLU A:484
binding site for residue PEG A 701
02
AC2
SOFTWARE
TYR A:211 , ALA A:212 , THR A:213 , SER A:299
binding site for residue PEG A 702
03
AC3
SOFTWARE
ALA A:379 , GLY A:380 , GLN A:461
binding site for residue PEG A 703
04
AC4
SOFTWARE
PRO A:-3 , VAL A:-2 , PRO A:0 , LYS A:64 , GLU A:240 , TRP A:241 , THR A:625 , HOH A:1020 , HOH A:1216
binding site for residue PG4 A 704
05
AC5
SOFTWARE
ALA A:18 , ASN A:19 , GLY A:21 , HIS A:45 , TYR A:385 , GLY A:386 , THR A:466 , HOH A:817 , HOH A:900 , HOH A:911 , HOH A:1244
binding site for residue P33 A 705
06
AC6
SOFTWARE
PHE A:23 , ASP A:25 , GLY A:27 , TYR A:55 , LYS A:74 , GLY A:380 , HOH A:804 , HOH A:809
binding site for residue PG4 A 706
07
AC7
SOFTWARE
GLU A:80 , ILE A:84 , PRO A:85 , GLN A:143 , VAL A:144 , TYR A:145 , LYS A:254 , HOH A:1087
binding site for residue PGE A 707
08
AC8
SOFTWARE
TRP A:302 , PGE A:709
binding site for residue PGE A 708
09
AC9
SOFTWARE
LYS A:102 , ALA A:104 , THR A:105 , TYR A:267 , TRP A:304 , PGE A:708
binding site for residue PGE A 709
10
AD1
SOFTWARE
PHE A:173 , GLN A:174 , GLY A:176 , LYS A:216 , VAL A:394 , PGE A:712 , HOH A:1051
binding site for residue 1PE A 710
11
AD2
SOFTWARE
ALA A:439 , VAL A:441 , GLN A:442 , TYR A:482 , SER A:573
binding site for residue PEG A 711
12
AD3
SOFTWARE
ASN A:219 , ALA A:220 , TRP A:290 , TYR A:315 , TYR A:395 , 1PE A:710 , HOH A:1226
binding site for residue PGE A 712
13
AD4
SOFTWARE
SER A:246
binding site for residue PEG A 713
14
AD5
SOFTWARE
GLN A:121 , PHE A:122 , GLY A:123
binding site for residue EDO A 714
15
AD6
SOFTWARE
THR A:327 , SER A:328 , ASP A:329
binding site for residue EDO A 715
16
AD7
SOFTWARE
HIS A:392 , GLU A:396 , GLU A:402
binding site for residue EDO A 716
17
AD8
SOFTWARE
HIS A:110 , SER A:118 , GLN A:119 , HOH A:953 , HOH A:1098
binding site for residue EDO A 717
18
AD9
SOFTWARE
ASN A:97 , ASN A:301 , HOH A:805
binding site for residue EDO A 718
19
AE1
SOFTWARE
TYR A:556 , SER A:559 , HOH A:1114
binding site for residue EDO A 719
20
AE2
SOFTWARE
LYS A:427 , HOH A:833 , HOH A:855 , HOH A:1125
binding site for residue EDO A 720
21
AE3
SOFTWARE
TYR A:419
binding site for residue EDO A 721
22
AE4
SOFTWARE
LYS A:583 , GLN A:586 , HOH A:813
binding site for residue SO4 A 722
23
AE5
SOFTWARE
GLU A:26 , VAL A:153 , ASP A:154 , THR A:165
binding site for residue CA A 723
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (231 KB)
Header - Asym.Unit
Biol.Unit 1 (223 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4XWL
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
