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Asym. Unit
Info
Asym.Unit (316 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (81 KB)
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(1)
Title
:
HUMAN CYTOCHROME P450 2D6 BACE1 INHIBITOR 6 COMPLEX
Authors
:
E. F. Johnson, Y. Fan
Date
:
21 Jan 15 (Deposition) - 20 May 15 (Release) - 20 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Cyp2D6, P450 2D6, Cytochrome P450, Monooxygenase, Oxidoreductase- Oxidoreductase Inhibitor Complex, Bace1
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Brodney, E. M. Beck, C. R. Butler, G. Barreiro, E. F. Johnson, D. Riddell, K. Parris, C. E. Nolan, Y. Fan, K. Atchison, C. Gonzales, A. E. Robshaw, S. D. Doran, M. W. Bundesmann, L. Buzon, J. Dutra, K. Henegar, E. Lachapelle, X. Hou, B. N. Rogers, J. Pandit, R. Lira, L. Martinez-Alsina, P. Mikochik, J. C. Murray, K. Ogilvie, L. Price, S. M. Sakya, A. Yu, Y. Zhang, B. T. O'Neill
Utilizing Structures Of Cyp2D6 And Bace1 Complexes To Reduc Risk Of Drug-Drug Interactions With A Novel Series Of Centrally Efficacious Bace1 Inhibitors.
J. Med. Chem. V. 58 3223 2015
[
close entry info
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Hetero Components
(5, 28)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: (4AR,6R,8AS)-8A-(2,4-DIFLUOROPHENY... (SI6a)
4b: (4AR,6R,8AS)-8A-(2,4-DIFLUOROPHENY... (SI6b)
4c: (4AR,6R,8AS)-8A-(2,4-DIFLUOROPHENY... (SI6c)
4d: (4AR,6R,8AS)-8A-(2,4-DIFLUOROPHENY... (SI6d)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
NA
4
Ligand/Ion
SODIUM ION
4
SI6
4
Ligand/Ion
(4AR,6R,8AS)-8A-(2,4-DIFLUOROPHENYL)-6-(1H-PYRAZOL-4-YL)-4,4A,5,6,8,8A-HEXAHYDROPYRANO[3,4-D][1,3]THIAZIN-2-AMINE
5
ZN
12
Ligand/Ion
ZINC ION
[
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:101 , VAL A:119 , PHE A:120 , TRP A:128 , ARG A:132 , ILE A:186 , THR A:309 , THR A:313 , GLN A:364 , VAL A:374 , HIS A:376 , LEU A:399 , PRO A:435 , PHE A:436 , SER A:437 , ARG A:441 , CYS A:443 , LEU A:444 , GLY A:445 , SI6 A:602 , HOH A:725
binding site for residue HEM A 601
02
AC2
SOFTWARE
PHE A:120 , ALA A:209 , GLY A:212 , LEU A:213 , GLU A:216 , GLN A:244 , ASP A:301 , SER A:304 , ALA A:305 , VAL A:308 , THR A:309 , PHE A:483 , HEM A:601
binding site for residue SI6 A 602
03
AC3
SOFTWARE
CYS A:191 , HIS A:258 , ASP A:270 , GLU A:273 , GLU C:287
binding site for residue ZN A 603
04
AC4
SOFTWARE
HIS A:463
binding site for residue ZN A 604
05
AC5
SOFTWARE
ASP A:422 , HIS A:426 , ASP B:422 , HIS B:426
binding site for residue ZN A 605
06
AC6
SOFTWARE
GLN A:244 , ASP A:301 , HOH A:714
binding site for residue GOL A 606
07
AC7
SOFTWARE
HIS A:324 , HOH A:721 , HOH A:778
binding site for residue ZN A 607
08
AC8
SOFTWARE
GLU A:446 , HOH A:720 , HOH A:752 , HOH A:764
binding site for residue NA A 608
09
AC9
SOFTWARE
ARG B:101 , VAL B:119 , PHE B:120 , TRP B:128 , ARG B:132 , ILE B:186 , THR B:309 , THR B:313 , VAL B:374 , HIS B:376 , LEU B:399 , PRO B:435 , PHE B:436 , SER B:437 , ARG B:441 , CYS B:443 , LEU B:444 , GLY B:445 , LEU B:448 , SI6 B:602 , HOH B:724
binding site for residue HEM B 601
10
AD1
SOFTWARE
PHE B:120 , ALA B:209 , GLY B:212 , LEU B:213 , GLU B:216 , ASP B:301 , SER B:304 , ALA B:305 , VAL B:308 , THR B:309 , PHE B:483 , HEM B:601 , GOL B:605
binding site for residue SI6 B 602
11
AD2
SOFTWARE
HIS B:258 , ASP B:270 , GLU B:273 , GLU B:287
binding site for residue ZN B 603
12
AD3
SOFTWARE
HIS B:463 , HOH B:727 , HOH B:738
binding site for residue ZN B 604
13
AD4
SOFTWARE
LEU B:121 , GLU B:216 , ASP B:301 , SI6 B:602 , HOH B:778
binding site for residue GOL B 605
14
AD5
SOFTWARE
GLY B:118 , VAL B:119 , PHE B:120 , ASP B:301
binding site for residue NA B 606
15
AD6
SOFTWARE
ARG C:101 , VAL C:119 , PHE C:120 , TRP C:128 , ARG C:132 , THR C:309 , THR C:313 , GLN C:364 , VAL C:374 , HIS C:376 , LEU C:399 , PRO C:435 , PHE C:436 , SER C:437 , ARG C:441 , CYS C:443 , LEU C:444 , GLY C:445 , LEU C:448 , SI6 C:602 , HOH C:731
binding site for residue HEM C 601
16
AD7
SOFTWARE
PHE C:120 , ALA C:209 , GLY C:212 , LEU C:213 , GLU C:216 , SER C:304 , ALA C:305 , VAL C:308 , THR C:309 , PHE C:483 , HEM C:601 , GOL C:606
binding site for residue SI6 C 602
17
AD8
SOFTWARE
GLU A:287 , HIS C:258 , ASP C:270 , GLU C:273
binding site for residue ZN C 603
18
AD9
SOFTWARE
GLN C:341 , HIS C:463
binding site for residue ZN C 604
19
AE1
SOFTWARE
HIS C:324 , HIS C:477 , HOH C:773
binding site for residue ZN C 605
20
AE2
SOFTWARE
LEU C:110 , LEU C:121 , ASP C:301 , SI6 C:602 , HOH C:772
binding site for residue GOL C 606
21
AE3
SOFTWARE
VAL C:119 , PHE C:120 , ASP C:301
binding site for residue NA C 607
22
AE4
SOFTWARE
ARG D:101 , VAL D:119 , PHE D:120 , TRP D:128 , ARG D:132 , ILE D:186 , LEU D:302 , THR D:309 , THR D:313 , VAL D:374 , HIS D:376 , LEU D:399 , PRO D:435 , PHE D:436 , SER D:437 , ARG D:441 , CYS D:443 , LEU D:444 , GLY D:445 , SI6 D:602 , HOH D:732
binding site for residue HEM D 601
23
AE5
SOFTWARE
PHE D:120 , ALA D:209 , GLY D:212 , LEU D:213 , GLU D:216 , ASP D:301 , SER D:304 , ALA D:305 , VAL D:308 , THR D:309 , PHE D:483 , HEM D:601 , GOL D:606
binding site for residue SI6 D 602
24
AE6
SOFTWARE
CYS D:191 , HIS D:258 , ASP D:270 , GLU D:273 , GLU D:287
binding site for residue ZN D 603
25
AE7
SOFTWARE
GLN D:341 , HIS D:463
binding site for residue ZN D 604
26
AE8
SOFTWARE
HIS D:324 , HIS D:477 , HOH D:717
binding site for residue ZN D 605
27
AE9
SOFTWARE
LEU D:110 , GLN D:244 , ALA D:300 , ASP D:301 , SER D:304 , SI6 D:602 , HOH D:781
binding site for residue GOL D 606
28
AF1
SOFTWARE
GLN D:131 , PHE D:134 , SER D:135 , VAL D:298 , HOH D:748
binding site for residue NA D 607
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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