PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4X00
Asym. Unit
Info
Asym.Unit (375 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (96 KB)
Biol.Unit 3 (95 KB)
Biol.Unit 4 (94 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF A PUTATIVE ARYL ESTERASE FROM BURKHOLDERIA CENOCEPACIA
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
20 Nov 14 (Deposition) - 03 Dec 14 (Release) - 03 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.38
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase, Aryl Esterase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. W. Fairman, T. E. Edwards, D. Lorimer
X-Ray Crystal Structure Of A Putative Aryl Esterase From Burkholderia Cenocepacia
To Be Published
[
close entry info
]
Hetero Components
(3, 20)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
2a: FLUORIDE ION (Fa)
2b: FLUORIDE ION (Fb)
2c: FLUORIDE ION (Fc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
2
F
3
Ligand/Ion
FLUORIDE ION
3
GOL
3
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:187 , HOH A:415 , HOH A:438 , HOH A:744 , ARG D:170 , ARG D:174
binding site for residue EDO A 301
02
AC2
SOFTWARE
LEU A:48 , SER A:51 , LEU A:263 , HOH A:662 , HOH A:756
binding site for residue EDO A 302
03
AC3
SOFTWARE
ALA A:228 , ASP A:230 , VAL A:233 , LYS A:234 , ALA A:235 , HOH A:525 , HOH A:617
binding site for residue EDO A 303
04
AC4
SOFTWARE
GLU A:252 , ARG A:268 , ARG A:271 , ASP A:272 , HOH A:421 , GLU D:99
binding site for residue EDO A 304
05
AC5
SOFTWARE
HOH A:406 , HOH A:411 , ILE D:98 , GLU D:99 , TYR D:121 , TYR D:125
binding site for residue EDO A 305
06
AC6
SOFTWARE
ASP A:275 , ARG A:278 , HOH A:417 , HOH A:428 , PRO D:19 , ASP D:20
binding site for residue EDO A 306
07
AC7
SOFTWARE
LYS A:52 , ARG A:179 , PRO A:181 , LEU A:263 , HOH A:566
binding site for residue EDO A 307
08
AC8
SOFTWARE
SER A:112 , LEU A:232
binding site for residue GOL A 308
09
AC9
SOFTWARE
ALA B:228 , ASP B:230 , VAL B:233 , LYS B:234 , ALA B:235 , HOH B:508 , HOH B:585 , HOH B:591
binding site for residue EDO B 301
10
AD1
SOFTWARE
LYS B:77 , ALA B:194 , LEU B:195 , ALA B:196 , LEU C:195
binding site for residue EDO B 302
11
AD2
SOFTWARE
ILE B:98 , GLU B:99 , TYR B:121 , TYR B:125 , HOH B:404 , ARG C:268 , HOH C:415
binding site for residue EDO B 303
12
AD3
SOFTWARE
SER C:187
binding site for residue F B 304
13
AD4
SOFTWARE
ALA C:228 , ASP C:230 , VAL C:233 , LYS C:234 , ALA C:235 , HOH C:517 , HOH C:581
binding site for residue EDO C 301
14
AD5
SOFTWARE
GLU B:99 , GLU C:252 , TYR C:254 , ARG C:268 , ARG C:271 , ASP C:272 , HOH C:404
binding site for residue EDO C 302
15
AD6
SOFTWARE
HIS C:150 , PRO C:151 , GLU C:152 , VAL C:153 , HOH C:695
binding site for residue GOL C 303
16
AD7
SOFTWARE
SER B:187 , ARG C:174
binding site for residue F C 304
17
AD8
SOFTWARE
LEU D:48 , ASN D:49 , SER D:51 , LEU D:188 , LEU D:263 , HOH D:564
binding site for residue EDO D 301
18
AD9
SOFTWARE
TYR A:254 , ALA A:255 , ASP A:256 , GLU A:265 , ARG A:268 , ILE D:98 , GLU D:99 , HOH D:402 , HOH D:441
binding site for residue EDO D 302
19
AE1
SOFTWARE
SER D:112 , TYR D:154 , HOH D:600
binding site for residue GOL D 303
20
AE2
SOFTWARE
SER D:187
binding site for residue F D 304
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (375 KB)
Header - Asym.Unit
Biol.Unit 1 (96 KB)
Header - Biol.Unit 1
Biol.Unit 2 (96 KB)
Header - Biol.Unit 2
Biol.Unit 3 (95 KB)
Header - Biol.Unit 3
Biol.Unit 4 (94 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4X00
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
