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4UM9
Biol. Unit 2
Info
Asym.Unit (642 KB)
Biol.Unit 1 (320 KB)
Biol.Unit 2 (318 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALPHA V BETA 6 WITH PEPTIDE
Authors
:
X. Dong, T. A. Springer
Date
:
15 May 14 (Deposition) - 12 Nov 14 (Release) - 16 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: C,D,F (1x)
Biol. Unit 2: A,B,E (1x)
Keywords
:
Immune System, Cell Surface Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Dong, N. E. Hudson, C. Lu, T. A. Springer
Structural Determinants Of Integrin Beta-Subunit Specificity For Latent Tgf-Beta
Nat. Struct. Mol. Biol. V. 21 1091 2014
[
close entry info
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Hetero Components
(5, 26)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
3i: CALCIUM ION (CAi)
3j: CALCIUM ION (CAj)
3k: CALCIUM ION (CAk)
3l: CALCIUM ION (CAl)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
6ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6q: N-ACETYL-D-GLUCOSAMINE (NAGq)
6r: N-ACETYL-D-GLUCOSAMINE (NAGr)
6s: N-ACETYL-D-GLUCOSAMINE (NAGs)
6t: N-ACETYL-D-GLUCOSAMINE (NAGt)
6u: N-ACETYL-D-GLUCOSAMINE (NAGu)
6v: N-ACETYL-D-GLUCOSAMINE (NAGv)
6w: N-ACETYL-D-GLUCOSAMINE (NAGw)
6x: N-ACETYL-D-GLUCOSAMINE (NAGx)
6y: N-ACETYL-D-GLUCOSAMINE (NAGy)
6z: N-ACETYL-D-GLUCOSAMINE (NAGz)
7a: N'-{4-[2-(DIAMINOMETHYLIDENE)HYDRA... (NHHa)
7b: N'-{4-[2-(DIAMINOMETHYLIDENE)HYDRA... (NHHb)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
8d: SULFATE ION (SO4d)
8e: SULFATE ION (SO4e)
8f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
-1
Mod. Amino Acid
ACETYL GROUP
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
5
MG
-1
Ligand/Ion
MAGNESIUM ION
6
NAG
15
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NHH
1
Mod. Amino Acid
N'-{4-[2-(DIAMINOMETHYLIDENE)HYDRAZONO]CYCLOHEXYLIDEN}AMINOMETHANEHYDRAZONAMIDE
8
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: BC7 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC1 (SOFTWARE)
19: DC2 (SOFTWARE)
20: DC3 (SOFTWARE)
21: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:230 , ASN A:232 , ASP A:234 , ILE A:236 , ASP A:238 , HOH A:4030
BINDING SITE FOR RESIDUE CA A2001
02
AC2
SOFTWARE
ASP A:284 , ASN A:286 , ASP A:288 , TYR A:290 , ASP A:292 , HOH A:4045
BINDING SITE FOR RESIDUE CA A2002
03
AC3
SOFTWARE
ASP A:349 , ASP A:351 , ASP A:353 , PHE A:355 , ASP A:357 , HOH A:4064
BINDING SITE FOR RESIDUE CA A2003
04
AC4
SOFTWARE
ASP A:413 , ASP A:415 , ASN A:417 , TYR A:419 , ASP A:421 , HOH A:4071
BINDING SITE FOR RESIDUE CA A2004
05
AC5
SOFTWARE
SER B:125 , SER B:127 , GLU B:223 , HOH B:4013 , HOH B:4014 , HOH B:4027 , ASP E:243
BINDING SITE FOR RESIDUE MG B2001
06
AC6
SOFTWARE
GLU B:162 , ASN B:218 , ASP B:220 , PRO B:222 , GLU B:223
BINDING SITE FOR RESIDUE CA B2002
07
AC7
SOFTWARE
SER B:127 , ASP B:130 , ASP B:131 , LYS B:338 , HOH B:4016
BINDING SITE FOR RESIDUE CA B2003
08
BC7
SOFTWARE
PRO A:488 , ARG A:489
BINDING SITE FOR RESIDUE SO4 A1595
09
CC1
SOFTWARE
HIS B:277
BINDING SITE FOR RESIDUE SO4 B1475
10
CC2
SOFTWARE
GLY A:13 , GLU A:15 , ARG A:398
BINDING SITE FOR RESIDUE SO4 A1596
11
CC3
SOFTWARE
ASN A:77 , PHE A:88 , LYS A:89 , SER A:90
BINDING SITE FOR RESIDUE SO4 A1597
12
CC4
SOFTWARE
GLU A:15 , GLY A:16 , LYS A:42 , ASN A:44 , GLU A:52 , HOH A:4004 , HOH A:4086 , HOH A:4087
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3044 THROUGH NAG A3045 BOUND TO ASN A 44
13
CC5
SOFTWARE
ASN A:232 , ASP A:257 , LYS A:259 , ASN A:260 , HOH A:4033 , HOH A:4088
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3260 THROUGH MAN A3263 BOUND TO ASN A 260
14
CC6
SOFTWARE
GLN A:214 , PHE A:217 , TYR A:254 , SER A:263 , LEU A:264 , ASN A:266 , HOH A:4028
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3266 THROUGH MAN A3271 BOUND TO ASN A 266
15
CC7
SOFTWARE
PRO A:451 , ASN A:458 , THR A:460 , CYS A:472 , PHE A:473 , ASN A:474 , HOH C:4052
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3458 THROUGH NAG A3459 BOUND TO ASN A 458
16
CC8
SOFTWARE
GLN A:494 , SER A:522 , ASN A:524 , ASP A:564
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3524 THROUGH NAG A3525 BOUND TO ASN A 524
17
CC9
SOFTWARE
PHE A:558 , PRO A:583 , ASN A:585
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3585 THROUGH NAG A3586 BOUND TO ASN A 585
18
DC1
SOFTWARE
ASN B:80 , SER B:82 , ASP B:83
BINDING SITE FOR MONO-SACCHARIDE NAG B3080 BOUND TO ASN B 80
19
DC2
SOFTWARE
ASN B:243 , HOH B:4063
BINDING SITE FOR MONO-SACCHARIDE NAG B3243 BOUND TO ASN B 243
20
DC3
SOFTWARE
SER A:305 , GLY B:368 , ASN B:370 , HOH B:4064 , LYS D:214
BINDING SITE FOR MONO-SACCHARIDE NAG B3370 BOUND TO ASN B 370
21
DC7
SOFTWARE
GLU A:448 , ARG A:588 , ASN C:458 , THR C:460 , CYS C:472 , ASN C:474 , MAN C:3461
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3458 THROUGH BMA C3460 BOUND TO ASN C 458
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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