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4UM9
Biol. Unit 1
Info
Asym.Unit (642 KB)
Biol.Unit 1 (320 KB)
Biol.Unit 2 (318 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALPHA V BETA 6 WITH PEPTIDE
Authors
:
X. Dong, T. A. Springer
Date
:
15 May 14 (Deposition) - 12 Nov 14 (Release) - 16 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: C,D,F (1x)
Biol. Unit 2: A,B,E (1x)
Keywords
:
Immune System, Cell Surface Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Dong, N. E. Hudson, C. Lu, T. A. Springer
Structural Determinants Of Integrin Beta-Subunit Specificity For Latent Tgf-Beta
Nat. Struct. Mol. Biol. V. 21 1091 2014
[
close entry info
]
Hetero Components
(6, 23)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
3i: CALCIUM ION (CAi)
3j: CALCIUM ION (CAj)
3k: CALCIUM ION (CAk)
3l: CALCIUM ION (CAl)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
6ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6q: N-ACETYL-D-GLUCOSAMINE (NAGq)
6r: N-ACETYL-D-GLUCOSAMINE (NAGr)
6s: N-ACETYL-D-GLUCOSAMINE (NAGs)
6t: N-ACETYL-D-GLUCOSAMINE (NAGt)
6u: N-ACETYL-D-GLUCOSAMINE (NAGu)
6v: N-ACETYL-D-GLUCOSAMINE (NAGv)
6w: N-ACETYL-D-GLUCOSAMINE (NAGw)
6x: N-ACETYL-D-GLUCOSAMINE (NAGx)
6y: N-ACETYL-D-GLUCOSAMINE (NAGy)
6z: N-ACETYL-D-GLUCOSAMINE (NAGz)
7a: N'-{4-[2-(DIAMINOMETHYLIDENE)HYDRA... (NHHa)
7b: N'-{4-[2-(DIAMINOMETHYLIDENE)HYDRA... (NHHb)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
8d: SULFATE ION (SO4d)
8e: SULFATE ION (SO4e)
8f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
5
MG
-1
Ligand/Ion
MAGNESIUM ION
6
NAG
13
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NHH
1
Mod. Amino Acid
N'-{4-[2-(DIAMINOMETHYLIDENE)HYDRAZONO]CYCLOHEXYLIDEN}AMINOMETHANEHYDRAZONAMIDE
8
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC8 (SOFTWARE)
02: AC9 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC7 (SOFTWARE)
12: DC3 (SOFTWARE)
13: DC4 (SOFTWARE)
14: DC5 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
19: EC1 (SOFTWARE)
20: EC2 (SOFTWARE)
21: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC8
SOFTWARE
ASP C:413 , ASP C:415 , ASN C:417 , TYR C:419 , ASP C:421 , HOH C:4040
BINDING SITE FOR RESIDUE CA C2001
02
AC9
SOFTWARE
ASP C:349 , ASP C:351 , ASP C:353 , PHE C:355 , ASP C:357
BINDING SITE FOR RESIDUE CA C2002
03
BC1
SOFTWARE
ASP C:230 , ASN C:232 , ASP C:234 , ILE C:236 , ASP C:238 , HOH C:4019
BINDING SITE FOR RESIDUE CA C2003
04
BC2
SOFTWARE
ASP C:284 , ASN C:286 , ASP C:288 , TYR C:290 , ASP C:292 , HOH C:4027
BINDING SITE FOR RESIDUE CA C2004
05
BC3
SOFTWARE
GLU C:448 , TYR C:450 , ARG C:476 , BMA C:3460
BINDING SITE FOR RESIDUE MAN C3461
06
BC4
SOFTWARE
ASP D:123 , SER D:125 , SER D:127 , GLU D:223 , HOH D:4004 , HOH D:4005 , HOH D:4011 , ASP F:243
BINDING SITE FOR RESIDUE MG D2001
07
BC5
SOFTWARE
SER D:127 , ASP D:130 , LYS D:338 , HOH D:4006
BINDING SITE FOR RESIDUE CA D2002
08
BC6
SOFTWARE
GLU D:162 , ASN D:218 , ASP D:220 , PRO D:222 , GLU D:223
BINDING SITE FOR RESIDUE CA D2003
09
BC8
SOFTWARE
ASN C:77 , PHE C:88 , LYS C:89 , SER C:90
BINDING SITE FOR RESIDUE SO4 C1595
10
BC9
SOFTWARE
SER C:528 , GLY C:531 , LEU C:532
BINDING SITE FOR RESIDUE SO4 C1596
11
CC7
SOFTWARE
PRO A:451 , ASN A:458 , THR A:460 , CYS A:472 , PHE A:473 , ASN A:474 , HOH C:4052
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3458 THROUGH NAG A3459 BOUND TO ASN A 458
12
DC3
SOFTWARE
SER A:305 , GLY B:368 , ASN B:370 , HOH B:4064 , LYS D:214
BINDING SITE FOR MONO-SACCHARIDE NAG B3370 BOUND TO ASN B 370
13
DC4
SOFTWARE
GLU C:15 , GLY C:16 , LYS C:42 , ASN C:44 , GLU C:52 , HOH C:4051
BINDING SITE FOR MONO-SACCHARIDE NAG C3044 BOUND TO ASN C 44
14
DC5
SOFTWARE
ASP C:234 , ASP C:257 , LYS C:259 , ASN C:260
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3260 THROUGH NAG C3261 BOUND TO ASN C 260
15
DC6
SOFTWARE
GLN C:214 , PHE C:217 , TYR C:254 , SER C:263 , LEU C:264 , ASN C:266
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3266 THROUGH MAN C3271 BOUND TO ASN C 266
16
DC7
SOFTWARE
GLU A:448 , ARG A:588 , ASN C:458 , THR C:460 , CYS C:472 , ASN C:474 , MAN C:3461
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3458 THROUGH BMA C3460 BOUND TO ASN C 458
17
DC8
SOFTWARE
GLN C:494 , SER C:522 , ASN C:524
BINDING SITE FOR MONO-SACCHARIDE NAG C3524 BOUND TO ASN C 524
18
DC9
SOFTWARE
PHE C:558 , PRO C:583 , ASN C:585
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3585 THROUGH NAG C3586 BOUND TO ASN C 585
19
EC1
SOFTWARE
ASN D:31 , GLN D:54
BINDING SITE FOR MONO-SACCHARIDE NAG D3031 BOUND TO ASN D 31
20
EC2
SOFTWARE
ASN D:80 , SER D:82 , HOH D:4022
BINDING SITE FOR MONO-SACCHARIDE NAG D3080 BOUND TO ASN D 80
21
EC3
SOFTWARE
ASN D:243
BINDING SITE FOR MONO-SACCHARIDE NAG D3243 BOUND TO ASN D 243
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein & NOT Site
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Chain C
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Asymmetric Unit 1
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