PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4TUF
Asym. Unit
Info
Asym.Unit (475 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (119 KB)
Biol.Unit 3 (120 KB)
Biol.Unit 4 (119 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CATALYTIC DOMAIN OF THE MAJOR ENDOGLUCANASE FROM XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS
Authors
:
A. C. Puhl, F. R. Rosseto, I. Polikarpov
Date
:
24 Jun 14 (Deposition) - 14 Oct 15 (Release) - 14 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Endoglucanase Tim Barrel Folding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. Puhl, F. R. Rosseto, I. Stankovic, T. M. Alvarez, F. M. Squina, M. S. Skaf, I. Polikarpov
Substrate Cleavage Pattern, Biophysical Characterization An Crystallographic Structure Of The Major Endoglucanase From Xanthomonas Campestris Pv. Campestris
To Be Published
[
close entry info
]
Hetero Components
(1, 27)
Info
All Hetero Components
1a: DIHYDROGENPHOSPHATE ION (2HPa)
1aa: DIHYDROGENPHOSPHATE ION (2HPaa)
1b: DIHYDROGENPHOSPHATE ION (2HPb)
1c: DIHYDROGENPHOSPHATE ION (2HPc)
1d: DIHYDROGENPHOSPHATE ION (2HPd)
1e: DIHYDROGENPHOSPHATE ION (2HPe)
1f: DIHYDROGENPHOSPHATE ION (2HPf)
1g: DIHYDROGENPHOSPHATE ION (2HPg)
1h: DIHYDROGENPHOSPHATE ION (2HPh)
1i: DIHYDROGENPHOSPHATE ION (2HPi)
1j: DIHYDROGENPHOSPHATE ION (2HPj)
1k: DIHYDROGENPHOSPHATE ION (2HPk)
1l: DIHYDROGENPHOSPHATE ION (2HPl)
1m: DIHYDROGENPHOSPHATE ION (2HPm)
1n: DIHYDROGENPHOSPHATE ION (2HPn)
1o: DIHYDROGENPHOSPHATE ION (2HPo)
1p: DIHYDROGENPHOSPHATE ION (2HPp)
1q: DIHYDROGENPHOSPHATE ION (2HPq)
1r: DIHYDROGENPHOSPHATE ION (2HPr)
1s: DIHYDROGENPHOSPHATE ION (2HPs)
1t: DIHYDROGENPHOSPHATE ION (2HPt)
1u: DIHYDROGENPHOSPHATE ION (2HPu)
1v: DIHYDROGENPHOSPHATE ION (2HPv)
1w: DIHYDROGENPHOSPHATE ION (2HPw)
1x: DIHYDROGENPHOSPHATE ION (2HPx)
1y: DIHYDROGENPHOSPHATE ION (2HPy)
1z: DIHYDROGENPHOSPHATE ION (2HPz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2HP
27
Ligand/Ion
DIHYDROGENPHOSPHATE ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:68 , ASP A:107 , LYS A:119
binding site for residue 2HP A 401
02
AC2
SOFTWARE
SER A:27 , ASN A:254 , ARG A:255 , HOH A:537
binding site for residue 2HP A 402
03
AC3
SOFTWARE
ARG A:92 , GLN A:156 , ASP A:160 , 2HP A:407 , HOH A:507 , CYS B:229
binding site for residue 2HP A 403
04
AC4
SOFTWARE
GLY A:192 , ASN A:193 , ALA A:194 , ASP A:197 , LYS A:200 , HOH A:536 , HOH A:543
binding site for residue 2HP A 404
05
AC5
SOFTWARE
PHE A:293 , THR A:296 , HIS A:297 , HOH A:567 , HOH A:579 , ASN C:166
binding site for residue 2HP A 405
06
AC6
SOFTWARE
ASP A:139 , ALA A:141 , GLY A:142 , HOH A:561 , HOH A:584 , TRP B:237
binding site for residue 2HP A 406
07
AC7
SOFTWARE
LEU A:91 , ARG A:92 , ASP A:160 , 2HP A:403 , CYS B:229 , CYS B:246
binding site for residue 2HP A 407
08
AC8
SOFTWARE
ARG B:65 , ASN B:66 , ASP B:69 , ARG D:65 , ASN D:66 , ASP D:69
binding site for residue 2HP B 401
09
AC9
SOFTWARE
LYS B:68 , ASP B:107 , HOH B:568 , 2HP D:404
binding site for residue 2HP B 402
10
AD1
SOFTWARE
ARG A:162 , GLY B:190 , GLY B:192 , ASP B:197 , ASN B:199 , LYS B:200 , THR B:247 , 2HP B:408 , HOH B:504
binding site for residue 2HP B 403
11
AD2
SOFTWARE
ASP B:101 , SER B:103 , ARG B:104 , HOH B:503 , 2HP D:401
binding site for residue 2HP B 404
12
AD3
SOFTWARE
HIS B:136 , ILE B:143 , ASN B:181 , GLU B:182 , GLU B:303 , TRP B:337
binding site for residue 2HP B 405
13
AD4
SOFTWARE
ILE A:143 , HIS A:184 , GLU B:145 , HIS B:184 , TRP B:237
binding site for residue 2HP B 406
14
AD5
SOFTWARE
TRP A:237 , ASP B:139 , ALA B:141 , GLY B:142 , HOH B:542
binding site for residue 2HP B 407
15
AD6
SOFTWARE
GLY B:192 , ALA B:194 , ASP B:197 , LYS B:200 , 2HP B:403 , HOH B:556
binding site for residue 2HP B 408
16
AD7
SOFTWARE
GLY C:192 , ASN C:193 , ALA C:194 , ASP C:197 , LYS C:200 , HOH C:519
binding site for residue 2HP C 401
17
AD8
SOFTWARE
LYS C:68 , ASP C:107 , LYS C:119
binding site for residue 2HP C 402
18
AD9
SOFTWARE
HIS C:136 , ILE C:143 , ASN C:181 , GLU C:182 , GLU C:303 , TRP C:337
binding site for residue 2HP C 403
19
AE1
SOFTWARE
GLU C:310 , ARG C:351 , ASP C:352 , ARG C:358
binding site for residue 2HP C 404
20
AE2
SOFTWARE
CYS A:229 , LEU C:91 , ARG C:92 , ASP C:160 , PHE C:163
binding site for residue 2HP C 405
21
AE3
SOFTWARE
ASP C:139 , GLY C:142 , SER C:144 , 2HP C:407 , 2HP C:408 , HOH C:529 , GLU D:145 , HIS D:184
binding site for residue 2HP C 406
22
AE4
SOFTWARE
ASP C:139 , ALA C:141 , GLY C:142 , 2HP C:406 , HOH C:529 , TRP D:237
binding site for residue 2HP C 407
23
AE5
SOFTWARE
ILE C:143 , GLU C:145 , HIS C:184 , TRP C:237 , 2HP C:406 , ILE D:143 , GLU D:145 , HIS D:184
binding site for residue 2HP C 408
24
AE6
SOFTWARE
2HP B:404 , LYS D:68 , ASP D:107
binding site for residue 2HP D 401
25
AE7
SOFTWARE
HIS D:136 , ILE D:143 , ASN D:181 , GLU D:182 , GLU D:303 , TRP D:337
binding site for residue 2HP D 402
26
AE8
SOFTWARE
GLY D:192 , ASN D:193 , ALA D:194 , ASP D:197 , LYS D:200 , HOH D:514
binding site for residue 2HP D 403
27
AE9
SOFTWARE
LYS B:68 , 2HP B:402 , ASP D:101 , SER D:103 , ARG D:104
binding site for residue 2HP D 404
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (475 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
Biol.Unit 2 (119 KB)
Header - Biol.Unit 2
Biol.Unit 3 (120 KB)
Header - Biol.Unit 3
Biol.Unit 4 (119 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4TUF
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
