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4Q31
Biol. Unit 2
Info
Asym.Unit (992 KB)
Biol.Unit 1 (492 KB)
Biol.Unit 2 (491 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF CYSTATHIONE GAMMA LYASE (CALE6) FROM MICROMONOSPORA ECHINOSPORA
Authors
:
K. Tan, L. Bigelow, R. Jedrzejczak, G. Babnigg, C. A. Bingman, R. M. Yenn S. Singh, M. K. Kharel, J. S. Thorson, G. N. Phillips Jr. , A. Joachimia Center For Structural Genomics (Mcsg), Enzyme Discovery For Product Biosynthesis (Natpro)
Date
:
10 Apr 14 (Deposition) - 07 May 14 (Release) - 08 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Cao, K. Tan, F. Wang, L. Bigelow, R. M. Yennamalli, R. Jedrzejczak, G. Babnigg, C. A. Bingman, A. Joachimiak, M. K. Kharel, S. Singh, J. S. Thorson, G. N. Phillips
Structural Dynamics Of A Methionine Gamma-Lyase For Calicheamicin Biosynthesis: Rotation Of The Conserved Tyrosine Stacking With Pyridoxal Phosphate.
Struct Dyn V. 3 34702 2016
[
close entry info
]
Hetero Components
(5, 36)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3ab: GLYCEROL (GOLab)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
4a: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPa)
4b: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPb)
4c: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPc)
4d: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPd)
4e: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPe)
4f: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPf)
4g: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPg)
4h: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPh)
5a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
5b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
5c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
5d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
5e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
5f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
5g: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESg)
5h: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESh)
6a: SELENOMETHIONINE (MSEa)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
6m: SELENOMETHIONINE (MSEm)
6n: SELENOMETHIONINE (MSEn)
6o: SELENOMETHIONINE (MSEo)
6p: SELENOMETHIONINE (MSEp)
6q: SELENOMETHIONINE (MSEq)
6r: SELENOMETHIONINE (MSEr)
6s: SELENOMETHIONINE (MSEs)
6t: SELENOMETHIONINE (MSEt)
6u: SELENOMETHIONINE (MSEu)
6v: SELENOMETHIONINE (MSEv)
6w: SELENOMETHIONINE (MSEw)
6x: SELENOMETHIONINE (MSEx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
FMT
3
Ligand/Ion
FORMIC ACID
3
GOL
13
Ligand/Ion
GLYCEROL
4
LLP
4
Mod. Amino Acid
(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
5
MES
4
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: BC8 (SOFTWARE)
02: CC8 (SOFTWARE)
03: CC9 (SOFTWARE)
04: DC1 (SOFTWARE)
05: DC2 (SOFTWARE)
06: DC3 (SOFTWARE)
07: DC4 (SOFTWARE)
08: DC5 (SOFTWARE)
09: DC6 (SOFTWARE)
10: DC7 (SOFTWARE)
11: DC8 (SOFTWARE)
12: DC9 (SOFTWARE)
13: EC1 (SOFTWARE)
14: EC2 (SOFTWARE)
15: EC3 (SOFTWARE)
16: EC4 (SOFTWARE)
17: EC5 (SOFTWARE)
18: EC6 (SOFTWARE)
19: EC7 (SOFTWARE)
20: EC8 (SOFTWARE)
21: EC9 (SOFTWARE)
22: FC1 (SOFTWARE)
23: FC2 (SOFTWARE)
24: FC3 (SOFTWARE)
25: FC4 (SOFTWARE)
26: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC8
SOFTWARE
ARG C:112 , ASP G:136
BINDING SITE FOR RESIDUE CL C 403
02
CC8
SOFTWARE
TYR E:100 , LLP E:197 , SER E:323 , LEU E:324 , ARG E:358 , GOL E:406 , HOH E:533 , TYR F:46
BINDING SITE FOR RESIDUE MES E 401
03
CC9
SOFTWARE
ARG E:168
BINDING SITE FOR RESIDUE CL E 402
04
DC1
SOFTWARE
ARG E:66 , LEU E:184 , ALA E:185 , ARG E:213 , HOH E:719
BINDING SITE FOR RESIDUE GOL E 403
05
DC2
SOFTWARE
ARG E:48 , THR E:227 , HOH E:706 , ALA F:101 , GLY F:102 , MES F:401
BINDING SITE FOR RESIDUE GOL E 404
06
DC3
SOFTWARE
LEU E:86 , ARG E:168 , LEU E:217 , ALA E:220 , HOH E:733
BINDING SITE FOR RESIDUE GOL E 405
07
DC4
SOFTWARE
TYR E:100 , ALA E:101 , GLY E:102 , MES E:401 , ARG F:48 , THR F:227
BINDING SITE FOR RESIDUE GOL E 406
08
DC5
SOFTWARE
TYR E:46 , GOL E:404 , TYR F:100 , SER F:323 , LEU F:324 , THR F:338 , ARG F:358 , HOH F:559
BINDING SITE FOR RESIDUE MES F 401
09
DC6
SOFTWARE
ARG F:168
BINDING SITE FOR RESIDUE CL F 402
10
DC7
SOFTWARE
ARG F:168 , LEU F:217 , ALA F:220 , HOH F:621 , HOH F:699
BINDING SITE FOR RESIDUE GOL F 403
11
DC8
SOFTWARE
ARG F:253 , LEU G:249 , HIS G:252 , HOH G:605
BINDING SITE FOR RESIDUE GOL F 404
12
DC9
SOFTWARE
ARG F:66 , ALA F:185 , ARG F:213
BINDING SITE FOR RESIDUE GOL F 405
13
EC1
SOFTWARE
PRO F:68 , PHE F:69 , ALA F:70
BINDING SITE FOR RESIDUE FMT F 406
14
EC2
SOFTWARE
TYR G:100 , LLP G:197 , SER G:323 , LEU G:324 , ARG G:358 , HOH G:623 , HOH G:692 , TYR H:46
BINDING SITE FOR RESIDUE MES G 401
15
EC3
SOFTWARE
ARG G:168
BINDING SITE FOR RESIDUE CL G 402
16
EC4
SOFTWARE
GLU G:65 , ARG G:66 , LEU G:184 , ARG G:213 , HOH G:707
BINDING SITE FOR RESIDUE GOL G 403
17
EC5
SOFTWARE
SER F:248 , LEU F:249 , ARG G:253
BINDING SITE FOR RESIDUE GOL G 404
18
EC6
SOFTWARE
ARG G:48 , THR G:227 , HOH G:706 , HOH G:708 , ALA H:101 , GLY H:102 , MES H:401
BINDING SITE FOR RESIDUE GOL G 405
19
EC7
SOFTWARE
ARG G:36 , ARG G:37 , HOH G:560 , CYS H:320
BINDING SITE FOR RESIDUE GOL G 406
20
EC8
SOFTWARE
ALA G:290 , GLN G:291 , MSE G:292 , SER G:293 , HOH G:600
BINDING SITE FOR RESIDUE GOL G 407
21
EC9
SOFTWARE
ARG G:168
BINDING SITE FOR RESIDUE FMT G 408
22
FC1
SOFTWARE
TYR G:46 , GOL G:405 , TYR H:100 , LLP H:197 , VAL H:322 , SER H:323 , LEU H:324 , ARG H:358 , HOH H:574 , HOH H:688
BINDING SITE FOR RESIDUE MES H 401
23
FC2
SOFTWARE
ARG H:168
BINDING SITE FOR RESIDUE CL H 402
24
FC3
SOFTWARE
MSE H:337
BINDING SITE FOR RESIDUE CL H 403
25
FC4
SOFTWARE
ARG H:66 , LEU H:184 , ARG H:213
BINDING SITE FOR RESIDUE GOL H 404
26
FC5
SOFTWARE
ARG H:168
BINDING SITE FOR RESIDUE FMT H 405
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein & NOT Site
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Chain E
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Asymmetric Unit 1
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Asym.Unit (992 KB)
Header - Asym.Unit
Biol.Unit 1 (492 KB)
Header - Biol.Unit 1
Biol.Unit 2 (491 KB)
Header - Biol.Unit 2
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