Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  THE CRYSTAL STRUCTURE OF CYSTATHIONE GAMMA LYASE (CALE6) FROM MICROMONOSPORA ECHINOSPORA
 
Authors :  K. Tan, L. Bigelow, R. Jedrzejczak, G. Babnigg, C. A. Bingman, R. M. Yenn S. Singh, M. K. Kharel, J. S. Thorson, G. N. Phillips Jr. , A. Joachimia Center For Structural Genomics (Mcsg), Enzyme Discovery For Product Biosynthesis (Natpro)
Date :  10 Apr 14  (Deposition) - 07 May 14  (Release) - 08 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Cao, K. Tan, F. Wang, L. Bigelow, R. M. Yennamalli, R. Jedrzejczak, G. Babnigg, C. A. Bingman, A. Joachimiak, M. K. Kharel, S. Singh, J. S. Thorson, G. N. Phillips
Structural Dynamics Of A Methionine Gamma-Lyase For Calicheamicin Biosynthesis: Rotation Of The Conserved Tyrosine Stacking With Pyridoxal Phosphate.
Struct Dyn V. 3 34702 2016
PubMed-ID: 27191010  |  Reference-DOI: 10.1063/1.4948539

(-) Compounds

Molecule 1 - CYSTATHIONE GAMMA LYASE CALE6
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG68
    Expression System StrainBL21(DE3)MAGIC
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneCALE6
    MutationYES
    Organism ScientificMICROMONOSPORA ECHINOSPORA
    Organism Taxid1877

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 85)

Asymmetric Unit (6, 85)
No.NameCountTypeFull Name
1CL12Ligand/IonCHLORIDE ION
2FMT5Ligand/IonFORMIC ACID
3GOL28Ligand/IonGLYCEROL
4LLP8Mod. Amino Acid(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
5MES8Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (5, 37)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMT2Ligand/IonFORMIC ACID
3GOL15Ligand/IonGLYCEROL
4LLP4Mod. Amino Acid(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
5MES4Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (5, 36)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMT3Ligand/IonFORMIC ACID
3GOL13Ligand/IonGLYCEROL
4LLP4Mod. Amino Acid(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
5MES4Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (50, 50)

Asymmetric Unit (50, 50)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:100 , LLP A:197 , VAL A:322 , SER A:323 , LEU A:324 , ARG A:358 , HOH A:591 , HOH A:651 , TYR B:46BINDING SITE FOR RESIDUE MES A 401
02AC2SOFTWAREARG A:168 , HOH A:610BINDING SITE FOR RESIDUE CL A 402
03AC3SOFTWAREARG A:168 , LEU A:217 , ALA A:220 , HOH A:538BINDING SITE FOR RESIDUE GOL A 404
04AC4SOFTWARESER A:18 , PRO A:27 , HIS A:29 , GLU A:56BINDING SITE FOR RESIDUE GOL A 405
05AC5SOFTWAREGLU A:65 , ARG A:66 , ALA A:185 , ARG A:213 , HOH A:568BINDING SITE FOR RESIDUE GOL A 406
06AC6SOFTWAREARG A:48 , THR A:226 , THR A:227 , HOH A:629 , TYR B:100 , ALA B:101 , GLY B:102 , MES B:401BINDING SITE FOR RESIDUE GOL A 407
07AC7SOFTWAREARG A:15 , PRO A:17 , SER A:18 , GLY A:22 , ASP A:23BINDING SITE FOR RESIDUE FMT A 408
08AC8SOFTWARETYR A:46 , GOL A:407 , HOH A:629 , TYR B:100 , LLP B:197 , VAL B:322 , SER B:323 , LEU B:324 , THR B:338 , ARG B:358 , HOH B:568 , HOH B:690BINDING SITE FOR RESIDUE MES B 401
09AC9SOFTWAREARG B:253 , ILE B:363 , GLU B:364 , ASP B:365 , GLY C:7 , SER C:248 , LEU C:249BINDING SITE FOR RESIDUE GOL B 403
10BC1SOFTWAREARG B:66 , LEU B:184 , ALA B:185 , ARG B:213 , HOH B:674BINDING SITE FOR RESIDUE GOL B 404
11BC2SOFTWAREGLY A:105 , THR B:226 , THR B:227 , HOH B:649 , HOH B:665BINDING SITE FOR RESIDUE GOL B 405
12BC3SOFTWAREARG B:16 , PRO B:17 , SER B:18 , HIS B:29 , GLU B:56 , HOH D:605BINDING SITE FOR RESIDUE GOL B 406
13BC4SOFTWAREVAL B:274 , HIS B:275 , TYR B:276 , GLU B:281 , HIS B:282BINDING SITE FOR RESIDUE GOL B 407
14BC5SOFTWAREGLY B:166 , ALA B:167 , ASP B:189BINDING SITE FOR RESIDUE GOL B 408
15BC6SOFTWARETYR C:100 , LLP C:197 , SER C:323 , LEU C:324 , THR C:338 , ARG C:358 , HOH C:611 , HOH C:645 , TYR D:46BINDING SITE FOR RESIDUE MES C 401
16BC7SOFTWAREARG C:168BINDING SITE FOR RESIDUE CL C 402
17BC8SOFTWAREARG C:112 , ASP G:136BINDING SITE FOR RESIDUE CL C 403
18BC9SOFTWAREGLU C:65 , LEU C:184 , ALA C:185 , ARG C:213BINDING SITE FOR RESIDUE GOL C 404
19CC1SOFTWAREARG C:168BINDING SITE FOR RESIDUE FMT C 405
20CC2SOFTWARETYR C:46 , TYR D:100 , LLP D:197 , SER D:323 , LEU D:324 , ARG D:358 , HOH D:577 , HOH D:629BINDING SITE FOR RESIDUE MES D 401
21CC3SOFTWAREARG D:168BINDING SITE FOR RESIDUE CL D 402
22CC4SOFTWAREGLU D:65 , ARG D:66 , LEU D:184 , ALA D:185 , ARG D:213BINDING SITE FOR RESIDUE GOL D 404
23CC5SOFTWAREALA C:101 , GLY C:102 , GLY C:105 , THR D:226 , THR D:227 , HOH D:656 , HOH D:690 , HOH D:691BINDING SITE FOR RESIDUE GOL D 405
24CC6SOFTWAREARG D:168 , HOH D:679BINDING SITE FOR RESIDUE GOL D 406
25CC7SOFTWAREHOH B:585 , ARG D:15 , ARG D:16 , PRO D:17 , SER D:18 , GLY D:22 , ASP D:23BINDING SITE FOR RESIDUE GOL D 407
26CC8SOFTWARETYR E:100 , LLP E:197 , SER E:323 , LEU E:324 , ARG E:358 , GOL E:406 , HOH E:533 , TYR F:46BINDING SITE FOR RESIDUE MES E 401
27CC9SOFTWAREARG E:168BINDING SITE FOR RESIDUE CL E 402
28DC1SOFTWAREARG E:66 , LEU E:184 , ALA E:185 , ARG E:213 , HOH E:719BINDING SITE FOR RESIDUE GOL E 403
29DC2SOFTWAREARG E:48 , THR E:227 , HOH E:706 , ALA F:101 , GLY F:102 , MES F:401BINDING SITE FOR RESIDUE GOL E 404
30DC3SOFTWARELEU E:86 , ARG E:168 , LEU E:217 , ALA E:220 , HOH E:733BINDING SITE FOR RESIDUE GOL E 405
31DC4SOFTWARETYR E:100 , ALA E:101 , GLY E:102 , MES E:401 , ARG F:48 , THR F:227BINDING SITE FOR RESIDUE GOL E 406
32DC5SOFTWARETYR E:46 , GOL E:404 , TYR F:100 , SER F:323 , LEU F:324 , THR F:338 , ARG F:358 , HOH F:559BINDING SITE FOR RESIDUE MES F 401
33DC6SOFTWAREARG F:168BINDING SITE FOR RESIDUE CL F 402
34DC7SOFTWAREARG F:168 , LEU F:217 , ALA F:220 , HOH F:621 , HOH F:699BINDING SITE FOR RESIDUE GOL F 403
35DC8SOFTWAREARG F:253 , LEU G:249 , HIS G:252 , HOH G:605BINDING SITE FOR RESIDUE GOL F 404
36DC9SOFTWAREARG F:66 , ALA F:185 , ARG F:213BINDING SITE FOR RESIDUE GOL F 405
37EC1SOFTWAREPRO F:68 , PHE F:69 , ALA F:70BINDING SITE FOR RESIDUE FMT F 406
38EC2SOFTWARETYR G:100 , LLP G:197 , SER G:323 , LEU G:324 , ARG G:358 , HOH G:623 , HOH G:692 , TYR H:46BINDING SITE FOR RESIDUE MES G 401
39EC3SOFTWAREARG G:168BINDING SITE FOR RESIDUE CL G 402
40EC4SOFTWAREGLU G:65 , ARG G:66 , LEU G:184 , ARG G:213 , HOH G:707BINDING SITE FOR RESIDUE GOL G 403
41EC5SOFTWARESER F:248 , LEU F:249 , ARG G:253BINDING SITE FOR RESIDUE GOL G 404
42EC6SOFTWAREARG G:48 , THR G:227 , HOH G:706 , HOH G:708 , ALA H:101 , GLY H:102 , MES H:401BINDING SITE FOR RESIDUE GOL G 405
43EC7SOFTWAREARG G:36 , ARG G:37 , HOH G:560 , CYS H:320BINDING SITE FOR RESIDUE GOL G 406
44EC8SOFTWAREALA G:290 , GLN G:291 , MSE G:292 , SER G:293 , HOH G:600BINDING SITE FOR RESIDUE GOL G 407
45EC9SOFTWAREARG G:168BINDING SITE FOR RESIDUE FMT G 408
46FC1SOFTWARETYR G:46 , GOL G:405 , TYR H:100 , LLP H:197 , VAL H:322 , SER H:323 , LEU H:324 , ARG H:358 , HOH H:574 , HOH H:688BINDING SITE FOR RESIDUE MES H 401
47FC2SOFTWAREARG H:168BINDING SITE FOR RESIDUE CL H 402
48FC3SOFTWAREMSE H:337BINDING SITE FOR RESIDUE CL H 403
49FC4SOFTWAREARG H:66 , LEU H:184 , ARG H:213BINDING SITE FOR RESIDUE GOL H 404
50FC5SOFTWAREARG H:168BINDING SITE FOR RESIDUE FMT H 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q31)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Thr A:144 -Pro A:145
2Asn A:147 -Pro A:148
3Thr B:144 -Pro B:145
4Asn B:147 -Pro B:148
5Thr C:144 -Pro C:145
6Asn C:147 -Pro C:148
7Thr D:144 -Pro D:145
8Asn D:147 -Pro D:148
9Thr E:144 -Pro E:145
10Asn E:147 -Pro E:148
11Thr F:144 -Pro F:145
12Asn F:147 -Pro F:148
13Thr G:144 -Pro G:145
14Asn G:147 -Pro G:148
15Thr H:144 -Pro H:145
16Asn H:147 -Pro H:148

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q31)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q31)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q31)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.....................hhhhh...........hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh......eeee....hhhhhhhhhhhhh...eeee....hhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeeee.........hhhhhh..eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.....eeeeee...hhhhhhhhh...ee.........eee..........hhhhhhhhh....eeeee....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q31 A   4 mRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAG 379
                            |       13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193   |   203       213       223       233       243       253       263       273       283       293       303       313       323       333   |   343       353       363       373      
                            |                                                                                                                                                                                              197-LLP                                                                                        292-MSE                                      337-MSE                                      
                            4-MSE                                                                                                                                                                                                                                                                                                                                                                                   

Chain B from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhh.....................................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhh..eeee....hhhhhhhhh....eeeeeee..........hhhhhhhhhhh...eeeee.........hhhhhh..eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee........hhhhhhhhh.....eeeeee...hhhhhhh.....ee.........eee..........hhhhhhhh.....eeeee....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4q31 B   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAGG 380
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372        
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                       

Chain C from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh.....................hhhhh...........hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh......eeeee...hhhhhhhhhhhhh...eeeee...hhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeeee.................eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhh.....eeeeee...hhhhhhhhh...ee.........eee..........hhhhhhhh.....eeeee....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q31 C   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAGGT 381
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372         
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                        

Chain D from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.....................................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee...hhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeeee.................eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.....eeeeee...hhhhhhh.....ee.........eee..........hhhhhhhhh....eeeee....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q31 D   4 mRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAG 379
                            |       13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193   |   203       213       223       233       243       253       263       273       283       293       303       313       323       333   |   343       353       363       373      
                            4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                      

Chain E from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh.....................hhhhh...........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhh......eeee....hhhhhhhhhhhhh...eeee....hhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeeee.................eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.....eeeeee...hhhhhhh.....ee.........eee..........hhhhhhhhh....eeeee....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q31 E   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALA 378
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372      
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                     

Chain F from PDB  Type:PROTEIN  Length:377
                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh.....................hhhhh...........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhh...eeeee...hhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeeee...hhhhhhhhhhhh..eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.....eeeeee...hhhhhhh.....ee.........eee..........hhhhhhhhh....eeeee....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q31 F   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAG 379
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372       
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                      

Chain G from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhh.....................................hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh......eeee....hhhhhhhhhhhhh...eeee....hhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeeee...hhhhhhhhhhhh..eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhh.....eeeeee...hhhhhhh.....ee.........eee..........hhhhhhhh.....eeeee....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4q31 G   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAGG 380
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372        
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                       

Chain H from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhh.....................hhhhh...........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhh......eeee....hhhhhhhhhhhhh...eeee....hhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeeee.................eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.....eeeeee...hhhhhhhhh...ee.........eee..........hhhhhhhhh....eeeee....hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4q31 H   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAGG 380
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372        
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q31)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q31)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q31)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FMT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    LLP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MES  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asn A:147 - Pro A:148   [ RasMol ]  
    Asn B:147 - Pro B:148   [ RasMol ]  
    Asn C:147 - Pro C:148   [ RasMol ]  
    Asn D:147 - Pro D:148   [ RasMol ]  
    Asn E:147 - Pro E:148   [ RasMol ]  
    Asn F:147 - Pro F:148   [ RasMol ]  
    Asn G:147 - Pro G:148   [ RasMol ]  
    Asn H:147 - Pro H:148   [ RasMol ]  
    Thr A:144 - Pro A:145   [ RasMol ]  
    Thr B:144 - Pro B:145   [ RasMol ]  
    Thr C:144 - Pro C:145   [ RasMol ]  
    Thr D:144 - Pro D:145   [ RasMol ]  
    Thr E:144 - Pro E:145   [ RasMol ]  
    Thr F:144 - Pro F:145   [ RasMol ]  
    Thr G:144 - Pro G:145   [ RasMol ]  
    Thr H:144 - Pro H:145   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4q31
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8KNG3_MICEC | Q8KNG3
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q8KNG3_MICEC | Q8KNG3
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8KNG3_MICEC | Q8KNG34u1t 4u2h 4xq2

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4Q31)