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4Q31
Asym. Unit
Info
Asym.Unit (992 KB)
Biol.Unit 1 (492 KB)
Biol.Unit 2 (491 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF CYSTATHIONE GAMMA LYASE (CALE6) FROM MICROMONOSPORA ECHINOSPORA
Authors
:
K. Tan, L. Bigelow, R. Jedrzejczak, G. Babnigg, C. A. Bingman, R. M. Yenn S. Singh, M. K. Kharel, J. S. Thorson, G. N. Phillips Jr. , A. Joachimia Center For Structural Genomics (Mcsg), Enzyme Discovery For Product Biosynthesis (Natpro)
Date
:
10 Apr 14 (Deposition) - 07 May 14 (Release) - 08 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Cao, K. Tan, F. Wang, L. Bigelow, R. M. Yennamalli, R. Jedrzejczak, G. Babnigg, C. A. Bingman, A. Joachimiak, M. K. Kharel, S. Singh, J. S. Thorson, G. N. Phillips
Structural Dynamics Of A Methionine Gamma-Lyase For Calicheamicin Biosynthesis: Rotation Of The Conserved Tyrosine Stacking With Pyridoxal Phosphate.
Struct Dyn V. 3 34702 2016
[
close entry info
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Hetero Components
(6, 85)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3ab: GLYCEROL (GOLab)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
4a: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPa)
4b: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPb)
4c: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPc)
4d: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPd)
4e: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPe)
4f: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPf)
4g: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPg)
4h: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPh)
5a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
5b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
5c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
5d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
5e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
5f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
5g: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESg)
5h: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESh)
6a: SELENOMETHIONINE (MSEa)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
6m: SELENOMETHIONINE (MSEm)
6n: SELENOMETHIONINE (MSEn)
6o: SELENOMETHIONINE (MSEo)
6p: SELENOMETHIONINE (MSEp)
6q: SELENOMETHIONINE (MSEq)
6r: SELENOMETHIONINE (MSEr)
6s: SELENOMETHIONINE (MSEs)
6t: SELENOMETHIONINE (MSEt)
6u: SELENOMETHIONINE (MSEu)
6v: SELENOMETHIONINE (MSEv)
6w: SELENOMETHIONINE (MSEw)
6x: SELENOMETHIONINE (MSEx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
12
Ligand/Ion
CHLORIDE ION
2
FMT
5
Ligand/Ion
FORMIC ACID
3
GOL
28
Ligand/Ion
GLYCEROL
4
LLP
8
Mod. Amino Acid
(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
5
MES
8
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:100 , LLP A:197 , VAL A:322 , SER A:323 , LEU A:324 , ARG A:358 , HOH A:591 , HOH A:651 , TYR B:46
BINDING SITE FOR RESIDUE MES A 401
02
AC2
SOFTWARE
ARG A:168 , HOH A:610
BINDING SITE FOR RESIDUE CL A 402
03
AC3
SOFTWARE
ARG A:168 , LEU A:217 , ALA A:220 , HOH A:538
BINDING SITE FOR RESIDUE GOL A 404
04
AC4
SOFTWARE
SER A:18 , PRO A:27 , HIS A:29 , GLU A:56
BINDING SITE FOR RESIDUE GOL A 405
05
AC5
SOFTWARE
GLU A:65 , ARG A:66 , ALA A:185 , ARG A:213 , HOH A:568
BINDING SITE FOR RESIDUE GOL A 406
06
AC6
SOFTWARE
ARG A:48 , THR A:226 , THR A:227 , HOH A:629 , TYR B:100 , ALA B:101 , GLY B:102 , MES B:401
BINDING SITE FOR RESIDUE GOL A 407
07
AC7
SOFTWARE
ARG A:15 , PRO A:17 , SER A:18 , GLY A:22 , ASP A:23
BINDING SITE FOR RESIDUE FMT A 408
08
AC8
SOFTWARE
TYR A:46 , GOL A:407 , HOH A:629 , TYR B:100 , LLP B:197 , VAL B:322 , SER B:323 , LEU B:324 , THR B:338 , ARG B:358 , HOH B:568 , HOH B:690
BINDING SITE FOR RESIDUE MES B 401
09
AC9
SOFTWARE
ARG B:253 , ILE B:363 , GLU B:364 , ASP B:365 , GLY C:7 , SER C:248 , LEU C:249
BINDING SITE FOR RESIDUE GOL B 403
10
BC1
SOFTWARE
ARG B:66 , LEU B:184 , ALA B:185 , ARG B:213 , HOH B:674
BINDING SITE FOR RESIDUE GOL B 404
11
BC2
SOFTWARE
GLY A:105 , THR B:226 , THR B:227 , HOH B:649 , HOH B:665
BINDING SITE FOR RESIDUE GOL B 405
12
BC3
SOFTWARE
ARG B:16 , PRO B:17 , SER B:18 , HIS B:29 , GLU B:56 , HOH D:605
BINDING SITE FOR RESIDUE GOL B 406
13
BC4
SOFTWARE
VAL B:274 , HIS B:275 , TYR B:276 , GLU B:281 , HIS B:282
BINDING SITE FOR RESIDUE GOL B 407
14
BC5
SOFTWARE
GLY B:166 , ALA B:167 , ASP B:189
BINDING SITE FOR RESIDUE GOL B 408
15
BC6
SOFTWARE
TYR C:100 , LLP C:197 , SER C:323 , LEU C:324 , THR C:338 , ARG C:358 , HOH C:611 , HOH C:645 , TYR D:46
BINDING SITE FOR RESIDUE MES C 401
16
BC7
SOFTWARE
ARG C:168
BINDING SITE FOR RESIDUE CL C 402
17
BC8
SOFTWARE
ARG C:112 , ASP G:136
BINDING SITE FOR RESIDUE CL C 403
18
BC9
SOFTWARE
GLU C:65 , LEU C:184 , ALA C:185 , ARG C:213
BINDING SITE FOR RESIDUE GOL C 404
19
CC1
SOFTWARE
ARG C:168
BINDING SITE FOR RESIDUE FMT C 405
20
CC2
SOFTWARE
TYR C:46 , TYR D:100 , LLP D:197 , SER D:323 , LEU D:324 , ARG D:358 , HOH D:577 , HOH D:629
BINDING SITE FOR RESIDUE MES D 401
21
CC3
SOFTWARE
ARG D:168
BINDING SITE FOR RESIDUE CL D 402
22
CC4
SOFTWARE
GLU D:65 , ARG D:66 , LEU D:184 , ALA D:185 , ARG D:213
BINDING SITE FOR RESIDUE GOL D 404
23
CC5
SOFTWARE
ALA C:101 , GLY C:102 , GLY C:105 , THR D:226 , THR D:227 , HOH D:656 , HOH D:690 , HOH D:691
BINDING SITE FOR RESIDUE GOL D 405
24
CC6
SOFTWARE
ARG D:168 , HOH D:679
BINDING SITE FOR RESIDUE GOL D 406
25
CC7
SOFTWARE
HOH B:585 , ARG D:15 , ARG D:16 , PRO D:17 , SER D:18 , GLY D:22 , ASP D:23
BINDING SITE FOR RESIDUE GOL D 407
26
CC8
SOFTWARE
TYR E:100 , LLP E:197 , SER E:323 , LEU E:324 , ARG E:358 , GOL E:406 , HOH E:533 , TYR F:46
BINDING SITE FOR RESIDUE MES E 401
27
CC9
SOFTWARE
ARG E:168
BINDING SITE FOR RESIDUE CL E 402
28
DC1
SOFTWARE
ARG E:66 , LEU E:184 , ALA E:185 , ARG E:213 , HOH E:719
BINDING SITE FOR RESIDUE GOL E 403
29
DC2
SOFTWARE
ARG E:48 , THR E:227 , HOH E:706 , ALA F:101 , GLY F:102 , MES F:401
BINDING SITE FOR RESIDUE GOL E 404
30
DC3
SOFTWARE
LEU E:86 , ARG E:168 , LEU E:217 , ALA E:220 , HOH E:733
BINDING SITE FOR RESIDUE GOL E 405
31
DC4
SOFTWARE
TYR E:100 , ALA E:101 , GLY E:102 , MES E:401 , ARG F:48 , THR F:227
BINDING SITE FOR RESIDUE GOL E 406
32
DC5
SOFTWARE
TYR E:46 , GOL E:404 , TYR F:100 , SER F:323 , LEU F:324 , THR F:338 , ARG F:358 , HOH F:559
BINDING SITE FOR RESIDUE MES F 401
33
DC6
SOFTWARE
ARG F:168
BINDING SITE FOR RESIDUE CL F 402
34
DC7
SOFTWARE
ARG F:168 , LEU F:217 , ALA F:220 , HOH F:621 , HOH F:699
BINDING SITE FOR RESIDUE GOL F 403
35
DC8
SOFTWARE
ARG F:253 , LEU G:249 , HIS G:252 , HOH G:605
BINDING SITE FOR RESIDUE GOL F 404
36
DC9
SOFTWARE
ARG F:66 , ALA F:185 , ARG F:213
BINDING SITE FOR RESIDUE GOL F 405
37
EC1
SOFTWARE
PRO F:68 , PHE F:69 , ALA F:70
BINDING SITE FOR RESIDUE FMT F 406
38
EC2
SOFTWARE
TYR G:100 , LLP G:197 , SER G:323 , LEU G:324 , ARG G:358 , HOH G:623 , HOH G:692 , TYR H:46
BINDING SITE FOR RESIDUE MES G 401
39
EC3
SOFTWARE
ARG G:168
BINDING SITE FOR RESIDUE CL G 402
40
EC4
SOFTWARE
GLU G:65 , ARG G:66 , LEU G:184 , ARG G:213 , HOH G:707
BINDING SITE FOR RESIDUE GOL G 403
41
EC5
SOFTWARE
SER F:248 , LEU F:249 , ARG G:253
BINDING SITE FOR RESIDUE GOL G 404
42
EC6
SOFTWARE
ARG G:48 , THR G:227 , HOH G:706 , HOH G:708 , ALA H:101 , GLY H:102 , MES H:401
BINDING SITE FOR RESIDUE GOL G 405
43
EC7
SOFTWARE
ARG G:36 , ARG G:37 , HOH G:560 , CYS H:320
BINDING SITE FOR RESIDUE GOL G 406
44
EC8
SOFTWARE
ALA G:290 , GLN G:291 , MSE G:292 , SER G:293 , HOH G:600
BINDING SITE FOR RESIDUE GOL G 407
45
EC9
SOFTWARE
ARG G:168
BINDING SITE FOR RESIDUE FMT G 408
46
FC1
SOFTWARE
TYR G:46 , GOL G:405 , TYR H:100 , LLP H:197 , VAL H:322 , SER H:323 , LEU H:324 , ARG H:358 , HOH H:574 , HOH H:688
BINDING SITE FOR RESIDUE MES H 401
47
FC2
SOFTWARE
ARG H:168
BINDING SITE FOR RESIDUE CL H 402
48
FC3
SOFTWARE
MSE H:337
BINDING SITE FOR RESIDUE CL H 403
49
FC4
SOFTWARE
ARG H:66 , LEU H:184 , ARG H:213
BINDING SITE FOR RESIDUE GOL H 404
50
FC5
SOFTWARE
ARG H:168
BINDING SITE FOR RESIDUE FMT H 405
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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