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Biol. Unit 2
Info
Asym.Unit (159 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (160 KB)
Biol.Unit 3 (143 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C1QTNF5 GLOBULAR DOMAIN IN SPACE GROUP P63
Authors
:
X. Tu, K. Palczewski
Date
:
15 Nov 13 (Deposition) - 26 Mar 14 (Release) - 23 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.42
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Biol. Unit 3: C (3x)
Keywords
:
L-Ormd, Late Onset Retinal Macular Degeneration, S163R, 10-Strand Jelly-Roll Fold, Cellular Adhesion, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Tu, K. Palczewski
The Macular Degeneration-Linked C1Qtnf5 (S163) Mutation Causes Higher-Order Structural Rearrangements.
J. Struct. Biol. V. 186 86 2014
[
close entry info
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(12, 12)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC5 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
LYS A:187 , EDO A:305 , HOH A:459 , HOH A:520 , TYR B:214 , EDO B:301
BINDING SITE FOR RESIDUE EDO A 303
02
AC5
SOFTWARE
TYR A:214 , EDO A:302 , EDO A:303 , HOH A:517 , LYS B:187
BINDING SITE FOR RESIDUE EDO A 305
03
BC3
SOFTWARE
ARG A:161 , HOH A:421 , ARG B:161 , TYR B:218 , HOH B:512
BINDING SITE FOR RESIDUE EDO A 312
04
BC5
SOFTWARE
SER A:113 , ARG A:161 , TYR A:218 , HOH A:526 , HOH A:533 , ARG B:114
BINDING SITE FOR RESIDUE ACT A 314
05
BC6
SOFTWARE
EDO A:303 , HOH B:420 , HOH B:516
BINDING SITE FOR RESIDUE EDO B 301
06
BC7
SOFTWARE
ALA B:102 , ARG B:103
BINDING SITE FOR RESIDUE EDO B 302
07
BC8
SOFTWARE
ALA B:157 , SER B:190 , LEU B:191 , SER B:192 , HOH B:503
BINDING SITE FOR RESIDUE EDO B 303
08
BC9
SOFTWARE
PRO B:118 , ALA B:121 , PRO B:122 , LEU B:123 , PRO B:124 , HOH B:414 , HOH B:470 , HOH B:493
BINDING SITE FOR RESIDUE EDO B 304
09
CC1
SOFTWARE
LYS B:142 , GLN B:204 , HOH B:457
BINDING SITE FOR RESIDUE EDO B 305
10
CC2
SOFTWARE
TRP B:185 , HOH B:427 , HOH B:429 , HOH B:435
BINDING SITE FOR RESIDUE SO4 B 306
11
CC3
SOFTWARE
ALA B:102 , ARG B:103 , ARG C:114
BINDING SITE FOR RESIDUE SO4 B 307
12
CC4
SOFTWARE
ARG A:114 , SER B:113 , ARG B:161 , TYR B:218 , HOH B:525 , HOH B:526
BINDING SITE FOR RESIDUE ACT B 308
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4nn0a_ (A:)
1b: SCOP_d4nn0b_ (B:)
1c: SCOP_d4nn0c_ (C:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(18)
1a
d4nn0a_
A:
1b
d4nn0b_
B:
1c
d4nn0c_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (159 KB)
Header - Asym.Unit
Biol.Unit 1 (157 KB)
Header - Biol.Unit 1
Biol.Unit 2 (160 KB)
Header - Biol.Unit 2
Biol.Unit 3 (143 KB)
Header - Biol.Unit 3
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