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4M5O
Biol. Unit 1
Info
Asym.Unit (82 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (148 KB)
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(1)
Title
:
3-HYDROXY-6-PHENYL-1,2-DIHYDROPYRIDIN-2-ONE BOUND TO INFLUENZA 2009 H1N1 ENDONUCLEASE
Authors
:
J. D. Bauman, D. Patel, K. Das, E. Arnold
Date
:
08 Aug 13 (Deposition) - 18 Sep 13 (Release) - 11 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Cap-Snatching, Rna Binding Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. D. Bauman, D. Patel, S. F. Baker, R. S. Vijayan, A. Xiang, A. K. Parhi, L. Martinez-Sobrido, E. J. Lavoie, K. Das, E. Arnold
Crystallographic Fragment Screening And Structure-Based Optimization Yields A New Class Of Influenza Endonuclease Inhibitors.
Acs Chem. Biol. V. 8 2501 2013
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
3a: SULFATE ION (SO4a)
4a: 3-HYDROXY-6-PHENYLPYRIDIN-2(5H)-ON... (X48a)
4b: 3-HYDROXY-6-PHENYLPYRIDIN-2(5H)-ON... (X48b)
4c: 3-HYDROXY-6-PHENYLPYRIDIN-2(5H)-ON... (X48c)
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No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
3
SO4
1
Ligand/Ion
SULFATE ION
4
X48
3
Ligand/Ion
3-HYDROXY-6-PHENYLPYRIDIN-2(5H)-ONE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:41 , ASP A:108 , GLU A:119 , ILE A:120 , X48 A:306
BINDING SITE FOR RESIDUE MN A 301
2
AC2
SOFTWARE
GLU A:80 , ASP A:108 , X48 A:306 , HOH A:421 , HOH A:475 , HOH A:539
BINDING SITE FOR RESIDUE MN A 302
3
AC3
SOFTWARE
GLU A:80 , X48 A:307 , X48 A:308 , HOH A:405
BINDING SITE FOR RESIDUE MN A 303
4
AC4
SOFTWARE
ILE A:30 , THR A:32 , ASN A:33 , GLU A:165 , GLU A:166 , ALA A:169 , HOH A:502
BINDING SITE FOR RESIDUE SO4 A 304
5
AC5
SOFTWARE
LYS A:34 , ARG A:124 , SER A:194 , X48 A:306 , HOH A:446 , HOH A:517
BINDING SITE FOR RESIDUE EDO A 305
6
AC6
SOFTWARE
LYS A:34 , HIS A:41 , GLU A:80 , ASP A:108 , GLU A:119 , ILE A:120 , LYS A:134 , MN A:301 , MN A:302 , EDO A:305 , HOH A:475 , HOH A:539
BINDING SITE FOR RESIDUE X48 A 306
7
AC7
SOFTWARE
LYS A:19 , TYR A:24 , GLU A:80 , GLY A:81 , ARG A:82 , ASP A:83 , MN A:303 , X48 A:308 , HOH A:405 , HOH A:477
BINDING SITE FOR RESIDUE X48 A 307
8
AC8
SOFTWARE
ALA A:20 , TYR A:24 , GLU A:26 , GLU A:80 , MN A:303 , X48 A:307 , HOH A:405 , HOH A:463 , HOH A:465 , HOH A:475
BINDING SITE FOR RESIDUE X48 A 308
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4m5oa_ (A:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Restriction endonuclease-like
(209)
Superfamily
:
Restriction endonuclease-like
(170)
Family
:
PA N-terminal domain
(25)
Protein domain
:
PA N-terminal domain
(24)
Influenza a virus (a/lima/wrair1695p/2009(h1n1)) [TaxId: 985958]
(11)
1a
d4m5oa_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (82 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (148 KB)
Header - Biol.Unit 2
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