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4M18
Asym. Unit
Info
Asym.Unit (572 KB)
Biol.Unit 1 (144 KB)
Biol.Unit 2 (145 KB)
Biol.Unit 3 (145 KB)
Biol.Unit 4 (144 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SURFACTANT PROTEIN-D D325A/R343V MUTANT IN COMPLEX WITH TRIMANNOSE (MAN-A1,2MAN-A1,2MAN)
Authors
:
B. C. Goh, M. J. Rynkiewicz, T. R. Cafarella, M. R. White, K. L. Hartshorn E. C. Crouch, O. Calin, P. H. Seeberger, K. Schulten, B. A. Seaton
Date
:
02 Aug 13 (Deposition) - 04 Dec 13 (Release) - 11 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Surfactant Protein, Carbohydrate Recognition Domain, Lectin, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. C. Goh, M. J. Rynkiewicz, T. R. Cafarella, M. R. White, K. L. Hartshorn, K. Allen, E. C. Crouch, O. Calin, P. H. Seeberger, K. Schulten, B. A. Seaton
Molecular Mechanisms Of Inhibition Of Influenza By Surfactant Protein D Revealed By Large-Scale Molecular Dynamics Simulation.
Biochemistry V. 52 8527 2013
[
close entry info
]
Hetero Components
(2, 72)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1aa: CALCIUM ION (CAaa)
1ab: CALCIUM ION (CAab)
1ac: CALCIUM ION (CAac)
1ad: CALCIUM ION (CAad)
1ae: CALCIUM ION (CAae)
1af: CALCIUM ION (CAaf)
1ag: CALCIUM ION (CAag)
1ah: CALCIUM ION (CAah)
1ai: CALCIUM ION (CAai)
1aj: CALCIUM ION (CAaj)
1ak: CALCIUM ION (CAak)
1al: CALCIUM ION (CAal)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
1x: CALCIUM ION (CAx)
1y: CALCIUM ION (CAy)
1z: CALCIUM ION (CAz)
2a: ALPHA-D-MANNOSE (MANa)
2aa: ALPHA-D-MANNOSE (MANaa)
2ab: ALPHA-D-MANNOSE (MANab)
2ac: ALPHA-D-MANNOSE (MANac)
2ad: ALPHA-D-MANNOSE (MANad)
2ae: ALPHA-D-MANNOSE (MANae)
2af: ALPHA-D-MANNOSE (MANaf)
2ag: ALPHA-D-MANNOSE (MANag)
2ah: ALPHA-D-MANNOSE (MANah)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
2r: ALPHA-D-MANNOSE (MANr)
2s: ALPHA-D-MANNOSE (MANs)
2t: ALPHA-D-MANNOSE (MANt)
2u: ALPHA-D-MANNOSE (MANu)
2v: ALPHA-D-MANNOSE (MANv)
2w: ALPHA-D-MANNOSE (MANw)
2x: ALPHA-D-MANNOSE (MANx)
2y: ALPHA-D-MANNOSE (MANy)
2z: ALPHA-D-MANNOSE (MANz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
38
Ligand/Ion
CALCIUM ION
2
MAN
34
Ligand/Ion
ALPHA-D-MANNOSE
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:321 , ASN A:323 , GLU A:329 , ASN A:341 , ASP A:342 , MAN A:406
BINDING SITE FOR RESIDUE CA A 401
02
AC2
SOFTWARE
ASP A:297 , GLU A:301 , ASP A:324 , GLU A:329 , ASP A:330
BINDING SITE FOR RESIDUE CA A 402
03
AC3
SOFTWARE
GLU A:301 , ASP A:330
BINDING SITE FOR RESIDUE CA A 403
04
AC4
SOFTWARE
GLU A:232 , GLU B:232 , GLU C:232
BINDING SITE FOR RESIDUE CA A 404
05
AC5
SOFTWARE
GLU B:321 , ASN B:323 , GLU B:329 , ASN B:341 , ASP B:342 , MAN B:405
BINDING SITE FOR RESIDUE CA B 401
06
AC6
SOFTWARE
ASP B:297 , GLU B:301 , ASP B:324 , GLU B:329 , ASP B:330
BINDING SITE FOR RESIDUE CA B 402
07
AC7
SOFTWARE
GLU B:301 , ASP B:330
BINDING SITE FOR RESIDUE CA B 403
08
AC8
SOFTWARE
GLU C:321 , ASN C:323 , GLU C:329 , ASN C:341 , ASP C:342 , MAN C:404
BINDING SITE FOR RESIDUE CA C 401
09
AC9
SOFTWARE
ASP C:297 , GLU C:301 , ASP C:324 , GLU C:329 , ASP C:330
BINDING SITE FOR RESIDUE CA C 402
10
BC1
SOFTWARE
GLU C:301 , ASP C:330 , HOH C:501 , HOH C:502
BINDING SITE FOR RESIDUE CA C 403
11
BC2
SOFTWARE
GLU D:321 , ASN D:323 , GLU D:329 , ASN D:341 , ASP D:342 , MAN D:405
BINDING SITE FOR RESIDUE CA D 401
12
BC3
SOFTWARE
ASP D:297 , GLU D:301 , ASP D:324 , GLU D:329 , ASP D:330
BINDING SITE FOR RESIDUE CA D 402
13
BC4
SOFTWARE
GLU D:301 , ASP D:330 , HOH D:501 , HOH D:502
BINDING SITE FOR RESIDUE CA D 403
14
BC5
SOFTWARE
GLU E:321 , ASN E:323 , GLU E:329 , ASN E:341 , ASP E:342 , MAN E:405
BINDING SITE FOR RESIDUE CA E 401
15
BC6
SOFTWARE
ASP E:297 , GLU E:301 , ASP E:324 , GLU E:329 , ASP E:330
BINDING SITE FOR RESIDUE CA E 402
16
BC7
SOFTWARE
GLU E:301 , ASP E:330 , HOH E:501
BINDING SITE FOR RESIDUE CA E 403
17
BC8
SOFTWARE
GLU F:321 , ASN F:323 , GLU F:329 , ASN F:341 , ASP F:342 , MAN F:405
BINDING SITE FOR RESIDUE CA F 401
18
BC9
SOFTWARE
ASP F:297 , GLU F:301 , ASP F:324 , GLU F:329 , ASP F:330
BINDING SITE FOR RESIDUE CA F 402
19
CC1
SOFTWARE
GLU F:301 , ASP F:330 , HOH F:501 , HOH F:502
BINDING SITE FOR RESIDUE CA F 403
20
CC2
SOFTWARE
GLU G:321 , ASN G:323 , GLU G:329 , ASN G:341 , ASP G:342 , MAN G:406
BINDING SITE FOR RESIDUE CA G 401
21
CC3
SOFTWARE
ASP G:297 , GLU G:301 , ASP G:324 , GLU G:329 , ASP G:330
BINDING SITE FOR RESIDUE CA G 402
22
CC4
SOFTWARE
GLU G:301 , ASP G:330
BINDING SITE FOR RESIDUE CA G 403
23
CC5
SOFTWARE
GLU G:232 , GLU H:232 , GLU I:232
BINDING SITE FOR RESIDUE CA G 404
24
CC6
SOFTWARE
GLU H:321 , ASN H:323 , GLU H:329 , ASN H:341 , ASP H:342 , MAN H:405
BINDING SITE FOR RESIDUE CA H 401
25
CC7
SOFTWARE
ASP H:297 , GLU H:301 , ASP H:324 , GLU H:329 , ASP H:330
BINDING SITE FOR RESIDUE CA H 402
26
CC8
SOFTWARE
GLU H:301 , ASP H:330 , HOH H:501 , HOH H:502
BINDING SITE FOR RESIDUE CA H 403
27
CC9
SOFTWARE
GLU I:321 , ASN I:323 , GLU I:329 , ASN I:341 , ASP I:342 , MAN I:405
BINDING SITE FOR RESIDUE CA I 401
28
DC1
SOFTWARE
ASP I:297 , GLU I:301 , ASP I:324 , GLU I:329 , ASP I:330
BINDING SITE FOR RESIDUE CA I 402
29
DC2
SOFTWARE
GLU I:301 , ASP I:330 , HOH I:501 , HOH I:502
BINDING SITE FOR RESIDUE CA I 403
30
DC3
SOFTWARE
GLU J:321 , ASN J:323 , GLU J:329 , ASN J:341 , ASP J:342 , MAN J:404
BINDING SITE FOR RESIDUE CA J 401
31
DC4
SOFTWARE
ASP J:297 , GLU J:301 , ASP J:324 , GLU J:329 , ASP J:330
BINDING SITE FOR RESIDUE CA J 402
32
DC5
SOFTWARE
GLU J:301 , ASP J:330
BINDING SITE FOR RESIDUE CA J 403
33
DC6
SOFTWARE
GLU K:321 , ASN K:323 , GLU K:329 , ASN K:341 , ASP K:342 , MAN K:405
BINDING SITE FOR RESIDUE CA K 401
34
DC7
SOFTWARE
ASP K:297 , GLU K:301 , ASP K:324 , GLU K:329 , ASP K:330
BINDING SITE FOR RESIDUE CA K 402
35
DC8
SOFTWARE
GLU K:301 , ASP K:330
BINDING SITE FOR RESIDUE CA K 403
36
DC9
SOFTWARE
GLU L:321 , ASN L:323 , GLU L:329 , ASN L:341 , ASP L:342 , MAN L:405
BINDING SITE FOR RESIDUE CA L 401
37
EC1
SOFTWARE
ASP L:297 , GLU L:301 , ASP L:324 , GLU L:329 , ASP L:330
BINDING SITE FOR RESIDUE CA L 402
38
EC2
SOFTWARE
GLU L:301 , ASP L:330 , HOH L:501 , HOH L:502
BINDING SITE FOR RESIDUE CA L 403
39
EC3
SOFTWARE
GLU A:321 , ASN A:323 , GLU A:329 , GLU A:333 , ASN A:341 , ASP A:342 , ARG A:349 , CA A:401 , THR E:308 , GLY E:309
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 405 TO 407
40
EC4
SOFTWARE
GLU B:321 , ASN B:323 , GLY B:326 , GLU B:329 , GLU B:333 , ASN B:341 , ASP B:342 , VAL B:343 , ARG B:349 , CA B:401 , THR K:308 , GLY K:309
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 404 TO 406
41
EC5
SOFTWARE
GLU C:321 , ASN C:323 , GLU C:329 , GLU C:333 , ASN C:341 , ASP C:342 , ARG C:349 , CA C:401
BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 404 TO 405
42
EC6
SOFTWARE
THR B:308 , GLU D:321 , ASN D:323 , GLU D:329 , GLU D:333 , ASN D:341 , ASP D:342 , VAL D:343 , ARG D:349 , CA D:401
BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 404 TO 406
43
EC7
SOFTWARE
GLU E:321 , ASN E:323 , ALA E:325 , GLU E:329 , GLU E:333 , ASN E:341 , ASP E:342 , VAL E:343 , ARG E:349 , CA E:401 , THR L:308 , GLY L:309
BINDING SITE FOR CHAIN E OF POLYSACCHARIDE RESIDUES 404 TO 406
44
EC8
SOFTWARE
GLU F:321 , ASN F:323 , GLU F:329 , GLU F:333 , ASN F:341 , ASP F:342 , VAL F:343 , ARG F:349 , CA F:401 , THR H:308 , GLY H:309
BINDING SITE FOR CHAIN F OF POLYSACCHARIDE RESIDUES 404 TO 406
45
EC9
SOFTWARE
THR D:308 , GLY D:309 , GLU G:321 , ASN G:323 , ALA G:325 , GLY G:326 , GLU G:329 , GLU G:333 , ASN G:341 , ASP G:342 , VAL G:343 , ARG G:349 , CA G:401
BINDING SITE FOR CHAIN G OF POLYSACCHARIDE RESIDUES 405 TO 407
46
FC1
SOFTWARE
GLU H:321 , ASN H:323 , ALA H:325 , GLU H:329 , GLU H:333 , PHE H:335 , ASN H:341 , ASP H:342 , VAL H:343 , ARG H:349 , CA H:401
BINDING SITE FOR CHAIN H OF POLYSACCHARIDE RESIDUES 404 TO 406
47
FC2
SOFTWARE
THR A:308 , GLU I:321 , ASN I:323 , GLU I:329 , GLU I:333 , PHE I:335 , ASN I:341 , ASP I:342 , ARG I:349 , CA I:401
BINDING SITE FOR CHAIN I OF POLYSACCHARIDE RESIDUES 404 TO 406
48
FC3
SOFTWARE
THR C:308 , GLY C:309 , GLU J:321 , ASN J:323 , GLU J:329 , GLU J:333 , ASN J:341 , ASP J:342 , VAL J:343 , ARG J:349 , CA J:401
BINDING SITE FOR CHAIN J OF POLYSACCHARIDE RESIDUES 404 TO 405
49
FC4
SOFTWARE
THR F:308 , GLY F:309 , GLU K:321 , ASN K:323 , ALA K:325 , GLY K:326 , GLU K:329 , GLU K:333 , ASN K:341 , ASP K:342 , VAL K:343 , ARG K:349 , CA K:401
BINDING SITE FOR CHAIN K OF POLYSACCHARIDE RESIDUES 404 TO 406
50
FC5
SOFTWARE
THR I:308 , GLY I:309 , GLU L:321 , ASN L:323 , GLU L:329 , GLU L:333 , ASN L:341 , ASP L:342 , VAL L:343 , ARG L:349 , CA L:401
BINDING SITE FOR CHAIN L OF POLYSACCHARIDE RESIDUES 404 TO 406
[
close Site info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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