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4M0L
Biol. Unit 4
Info
Asym.Unit (414 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (74 KB)
Biol.Unit 5 (74 KB)
Biol.Unit 6 (75 KB)
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(1)
Title
:
GAMMA SUBUNIT OF THE TRANSLATION INITIATION FACTOR 2 FROM SULFOLOBUS SOLFATARICUS COMPLEXED WITH GDP
Authors
:
O. S. Nikonov, E. A. Stolboushkina, V. I. Arkhipova, A. G. Gabdulkhakov A. D. Nikulin, A. M. Lazopulo, S. M. Lazopulo, M. B. Garber, S. V. Nikono
Date
:
01 Aug 13 (Deposition) - 28 Aug 13 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Aif2, Aif2 Gamma Subunit, G-Protein, Translation, Translation Initiation, Protein Biosynthesis, Rna-Binding, Gtp-Binding, Nucleotide-Binding
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Reference
:
O. Nikonov, E. Stolboushkina, V. Arkhipova, O. Kravchenko, S. Nikonov, M. Garber
Conformational Transitions In The Gamma Subunit Of The Archaeal Translation Initiation Factor 2
Acta Crystallogr. , Sect. D V. 70 658 2014
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
1c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
1d: GUANOSINE-5'-DIPHOSPHATE (GDPd)
1e: GUANOSINE-5'-DIPHOSPHATE (GDPe)
1f: GUANOSINE-5'-DIPHOSPHATE (GDPf)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
3a: PHOSPHATE ION (PO4a)
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No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
PO4
-1
Ligand/Ion
PHOSPHATE ION
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Sites
(2, 2)
Info
All Sites
1: AC8 (SOFTWARE)
2: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC8
SOFTWARE
ARG A:404 , ASP D:19 , GLY D:21 , LYS D:22 , THR D:23 , THR D:24 , ASN D:149 , LYS D:150 , ASP D:152 , VAL D:153 , SER D:184 , ALA D:185 , LEU D:186 , MG D:502 , HOH D:617 , HOH D:631 , HOH D:650
BINDING SITE FOR RESIDUE GDP D 501
2
AC9
SOFTWARE
THR D:23 , GDP D:501 , HOH D:617 , HOH D:631 , HOH D:632
BINDING SITE FOR RESIDUE MG D 502
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 18)
Info
All SCOP Domains
1a: SCOP_d4m0la3 (A:321-415)
1b: SCOP_d4m0lb3 (B:321-415)
1c: SCOP_d4m0lc3 (C:321-415)
1d: SCOP_d4m0ld3 (D:321-415)
1e: SCOP_d4m0le3 (E:321-415)
1f: SCOP_d4m0lf3 (F:321-415)
2a: SCOP_d4m0la2 (A:207-320)
2b: SCOP_d4m0lb2 (B:207-320)
2c: SCOP_d4m0lc2 (C:207-320)
2d: SCOP_d4m0ld2 (D:207-320)
2e: SCOP_d4m0le2 (E:207-320)
2f: SCOP_d4m0lf2 (F:207-320)
3a: SCOP_d4m0la1 (A:2-206)
3b: SCOP_d4m0lb1 (B:2-206)
3c: SCOP_d4m0lc1 (C:2-206)
3d: SCOP_d4m0ld1 (D:2-206)
3e: SCOP_d4m0le1 (E:2-206)
3f: SCOP_d4m0lf1 (F:2-206)
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Protein Domains
(
)
(
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Organisms
(
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Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Initiation factor eIF2 gamma subunit
(16)
Sulfolobus solfataricus [TaxId: 2287]
(10)
1a
d4m0la3
A:321-415
1b
d4m0lb3
B:321-415
1c
d4m0lc3
C:321-415
1d
d4m0ld3
D:321-415
1e
d4m0le3
E:321-415
1f
d4m0lf3
F:321-415
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Initiation factor eIF2 gamma subunit, domain II
(16)
Sulfolobus solfataricus [TaxId: 2287]
(10)
2a
d4m0la2
A:207-320
2b
d4m0lb2
B:207-320
2c
d4m0lc2
C:207-320
2d
d4m0ld2
D:207-320
2e
d4m0le2
E:207-320
2f
d4m0lf2
F:207-320
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Initiation factor eIF2 gamma subunit, N-terminal (G) domain
(16)
Sulfolobus solfataricus [TaxId: 2287]
(10)
3a
d4m0la1
A:2-206
3b
d4m0lb1
B:2-206
3c
d4m0lc1
C:2-206
3d
d4m0ld1
D:2-206
3e
d4m0le1
E:2-206
3f
d4m0lf1
F:2-206
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CATH Domains
(0, 0)
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Pfam Domains
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Chain D
Asymmetric Unit 1
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Asym.Unit (414 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
Biol.Unit 3 (75 KB)
Header - Biol.Unit 3
Biol.Unit 4 (74 KB)
Header - Biol.Unit 4
Biol.Unit 5 (74 KB)
Header - Biol.Unit 5
Biol.Unit 6 (75 KB)
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