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Asym. Unit
Info
Asym.Unit (186 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
OPEN AND CLOSED FORMS OF T1800E HUMAN PRP8 RNASE H-LIKE DOMAIN WITH BOUND MG ION
Authors
:
M. J. Schellenberg, T. Wu, D. B. Ritchie, K. A. Atta, A. M. Macmillan
Date
:
09 Mar 13 (Deposition) - 22 May 13 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Metalloprotein, Conformational Change, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Schellenberg, T. Wu, D. B. Ritchie, S. Fica, J. P. Staley, K. A. Atta, P. Lapointe, A. M. Macmillan
A Conformational Switch In Prp8 Mediates Metal Ion Coordination That Promotes Pre-Mrna Exon Ligation.
Nat. Struct. Mol. Biol. V. 20 728 2013
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
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No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:1865 , GLY A:1867 , HOH A:2408
BINDING SITE FOR RESIDUE CL A 2001
2
AC2
SOFTWARE
LYS A:1820 , GLN A:1913 , MET A:1914 , HOH A:2206 , HOH A:2418
BINDING SITE FOR RESIDUE CL A 2002
3
AC3
SOFTWARE
VAL A:1854 , GLU A:1855 , GLN A:1857 , LYS A:1859 , HOH A:2131 , HOH A:2234 , HOH A:2372 , HOH A:2381
BINDING SITE FOR RESIDUE GOL A 2003
4
AC4
SOFTWARE
THR A:1783 , ARG A:1865 , HOH A:2150 , HOH A:2208 , HOH A:2350 , HOH A:2451
BINDING SITE FOR RESIDUE GOL A 2004
5
AC5
SOFTWARE
ASP B:1781 , HOH B:2176 , HOH B:2205 , HOH B:2214 , HOH B:2259 , HOH B:2284
BINDING SITE FOR RESIDUE MG B 2001
6
AC6
SOFTWARE
GLU A:1856 , HOH A:2422 , HOH A:2432 , GLU B:1856 , HOH B:2249 , HOH B:2348 , HOH B:2374
BINDING SITE FOR RESIDUE MG B 2002
7
AC7
SOFTWARE
THR A:1814 , HOH A:2316 , GLU B:1855 , HOH B:2110
BINDING SITE FOR RESIDUE CL B 2003
8
AC8
SOFTWARE
SER B:1825 , HOH B:2291
BINDING SITE FOR RESIDUE CL B 2004
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4jkca_ (A:)
1b: SCOP_d4jkcb_ (B:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Prp8 beta-finger domain-like
(20)
Protein domain
:
Pre-mRNA-splicing factor 8, Prp8
(19)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d4jkca_
A:
1b
d4jkcb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (186 KB)
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