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4JK9
Asym. Unit
Info
Asym.Unit (178 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (87 KB)
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(1)
Title
:
OPEN AND CLOSED FORMS OF WILD-TYPE HUMAN PRP8 RNASE H-LIKE DOMAIN WITH BOUND CO ION
Authors
:
M. J. Schellenberg, T. Wu, D. B. Ritchie, K. A. Atta, A. M. Macmillan
Date
:
09 Mar 13 (Deposition) - 22 May 13 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Metalloprotein, Conformational Change, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Schellenberg, T. Wu, D. B. Ritchie, S. Fica, J. P. Staley, K. A. Atta, P. Lapointe, A. M. Macmillan
A Conformational Switch In Prp8 Mediates Metal Ion Coordination That Promotes Pre-Mrna Exon Ligation.
Nat. Struct. Mol. Biol. V. 20 728 2013
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: COBALT (II) ION (COa)
2b: COBALT (II) ION (COb)
2c: COBALT (II) ION (COc)
2d: COBALT (II) ION (COd)
2e: COBALT (II) ION (COe)
2f: COBALT (II) ION (COf)
3a: GLYCEROL (GOLa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
CO
6
Ligand/Ion
COBALT (II) ION
3
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:1922 , HIS A:1965 , HIS A:1966 , HOH A:2269 , HOH A:2356 , HOH A:2388
BINDING SITE FOR RESIDUE CO A 2001
02
AC2
SOFTWARE
GLU A:1843 , HOH A:2347 , HOH A:2351 , HOH A:2369 , HOH A:2383
BINDING SITE FOR RESIDUE CO A 2002
03
AC3
SOFTWARE
GLU A:1911 , PRO A:1912 , HOH A:2197 , HOH A:2256 , LEU B:1905 , LYS B:1908 , GLN B:1913
BINDING SITE FOR RESIDUE GOL A 2003
04
AC4
SOFTWARE
SER A:1929 , TYR A:1930 , HOH B:2181
BINDING SITE FOR RESIDUE CL A 2004
05
AC5
SOFTWARE
ASP B:1781 , HOH B:2153 , HOH B:2172 , HOH B:2279 , HOH B:2320
BINDING SITE FOR RESIDUE CO B 2001
06
AC6
SOFTWARE
GLU A:1856 , HOH A:2327 , HOH A:2363 , GLU B:1856 , HOH B:2240 , HOH B:2280 , HOH B:2319
BINDING SITE FOR RESIDUE CO B 2002
07
AC7
SOFTWARE
ASP B:1922 , HIS B:1965 , HIS B:1966 , HOH B:2283 , HOH B:2317 , HOH B:2330
BINDING SITE FOR RESIDUE CO B 2003
08
AC8
SOFTWARE
GLU A:1873 , HOH A:2121 , GLU B:1888 , HOH B:2226 , HOH B:2292
BINDING SITE FOR RESIDUE CO B 2004
09
AC9
SOFTWARE
THR B:1824 , ALA B:1837 , HOH B:2155
BINDING SITE FOR RESIDUE CL B 2005
10
BC1
SOFTWARE
SER B:1825 , LYS B:1840
BINDING SITE FOR RESIDUE CL B 2006
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4jk9a_ (A:)
1b: SCOP_d4jk9b_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Prp8 beta-finger domain-like
(20)
Protein domain
:
Pre-mRNA-splicing factor 8, Prp8
(19)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d4jk9a_
A:
1b
d4jk9b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (178 KB)
Header - Asym.Unit
Biol.Unit 1 (90 KB)
Header - Biol.Unit 1
Biol.Unit 2 (87 KB)
Header - Biol.Unit 2
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