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4JK7
Biol. Unit 2
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Asym.Unit (189 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (91 KB)
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(1)
Title
:
OPEN AND CLOSED FORMS OF WILD-TYPE HUMAN PRP8 RNASE H-LIKE DOMAIN WITH BOUND MG ION
Authors
:
M. J. Schellenberg, T. Wu, D. B. Ritchie, K. Atta, A. M. Macmillan
Date
:
09 Mar 13 (Deposition) - 22 May 13 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Metalloprotein, Conformational Change, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Schellenberg, T. Wu, D. B. Ritchie, S. Fica, J. P. Staley, K. A. Atta, P. Lapointe, A. M. Macmillan
A Conformational Switch In Prp8 Mediates Metal Ion Coordination That Promotes Pre-Mrna Exon Ligation.
Nat. Struct. Mol. Biol. V. 20 728 2013
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
7: AC8 (SOFTWARE)
8: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:1911 , PRO A:1912 , HOH A:2201 , HOH A:2268 , HOH A:2300 , HOH A:2495 , LEU B:1905 , LYS B:1908 , GLN B:1913
BINDING SITE FOR RESIDUE GOL A 2001
2
AC2
SOFTWARE
GLN A:1816 , LEU A:1852 , GLU A:1856 , HOH A:2155 , HOH A:2206 , GLN B:1816 , LEU B:1852
BINDING SITE FOR RESIDUE GOL A 2002
3
AC3
SOFTWARE
TYR A:1930 , HOH B:2161
BINDING SITE FOR RESIDUE CL A 2003
4
AC5
SOFTWARE
ARG A:1865 , GLY A:1867 , HOH B:2370
BINDING SITE FOR RESIDUE CL A 2005
5
AC6
SOFTWARE
ASP B:1781 , HOH B:2213 , HOH B:2214 , HOH B:2245 , HOH B:2321
BINDING SITE FOR RESIDUE MG B 2001
6
AC7
SOFTWARE
GLU A:1856 , HOH A:2322 , HOH A:2468 , GLU B:1856 , HOH B:2212 , HOH B:2247 , HOH B:2379
BINDING SITE FOR RESIDUE MG B 2002
7
AC8
SOFTWARE
THR B:1824 , GLN B:1830 , LEU B:1836 , ALA B:1837
BINDING SITE FOR RESIDUE CL B 2003
8
AC9
SOFTWARE
ILE A:1977 , VAL B:1788 , THR B:1789
BINDING SITE FOR RESIDUE CL B 2004
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4jk7a_ (A:)
1b: SCOP_d4jk7b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Prp8 beta-finger domain-like
(20)
Protein domain
:
Pre-mRNA-splicing factor 8, Prp8
(19)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d4jk7a_
A:
1b
d4jk7b_
B:
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (189 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
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