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4IN6
Asym. Unit
Info
Asym.Unit (165 KB)
Biol.Unit 1 (153 KB)
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(1)
Title
:
(M)L214A MUTANT OF THE RHODOBACTER SPHAEROIDES REACTION CENTER
Authors
:
R. G. Saer, A. Hardjasa, M. E. P Murphy, J. T. Beatty
Date
:
04 Jan 13 (Deposition) - 01 May 13 (Release) - 01 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : H,L,M
Biol. Unit 1: H,L,M (1x)
Keywords
:
Electron Transfer, Chromatophore, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. G. Saer, A. Hardjasa, F. I. Rosell, A. G. Mauk, M. E. Murphy, J. T. Beatty
Role Of Rhodobacter Sphaeroides Photosynthetic Reaction Center Residue M214 In The Composition, Absorbance Properties, And Conformations Of Ha And Ba Cofactors.
Biochemistry V. 52 2206 2013
[
close entry info
]
Hetero Components
(12, 33)
Info
All Hetero Components
01a: BACTERIOCHLOROPHYLL A (BCLa)
01b: BACTERIOCHLOROPHYLL A (BCLb)
01c: BACTERIOCHLOROPHYLL A (BCLc)
01d: BACTERIOCHLOROPHYLL A (BCLd)
02a: BACTERIOPHEOPHYTIN A (BPHa)
02b: BACTERIOPHEOPHYTIN A (BPHb)
03a: CARDIOLIPIN (CDLa)
04a: FE (III) ION (FEa)
05a: NONADEC-10-ENOIC ACID 2-[3,4-DIHYD... (GGDa)
06a: GLYCEROL (GOLa)
06b: GLYCEROL (GOLb)
06c: GLYCEROL (GOLc)
06d: GLYCEROL (GOLd)
06e: GLYCEROL (GOLe)
06f: GLYCEROL (GOLf)
06g: GLYCEROL (GOLg)
06h: GLYCEROL (GOLh)
06i: GLYCEROL (GOLi)
06j: GLYCEROL (GOLj)
06k: GLYCEROL (GOLk)
07a: HEPTANE-1,2,3-TRIOL (HTOa)
08a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
08b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
08c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
09a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1a)
10a: PHOSPHATE ION (PO4a)
10b: PHOSPHATE ION (PO4b)
10c: PHOSPHATE ION (PO4c)
10d: PHOSPHATE ION (PO4d)
10e: PHOSPHATE ION (PO4e)
11a: SPHEROIDENE (SPOa)
12a: UBIQUINONE-10 (U10a)
12b: UBIQUINONE-10 (U10b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
4
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
2
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
CDL
1
Ligand/Ion
CARDIOLIPIN
4
FE
1
Ligand/Ion
FE (III) ION
5
GGD
1
Ligand/Ion
NONADEC-10-ENOIC ACID 2-[3,4-DIHYDROXY-6-HYDROXYMETHYL-5-(3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-2-YLOXY)-TETRAHYDRO-PYRAN-2-YLOXY]-1-OCTADEC-9-ENOYLOXYMETHYL-ETHYL ESTER
6
GOL
11
Ligand/Ion
GLYCEROL
7
HTO
1
Ligand/Ion
HEPTANE-1,2,3-TRIOL
8
LDA
3
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
9
PC1
1
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
10
PO4
5
Ligand/Ion
PHOSPHATE ION
11
SPO
1
Ligand/Ion
SPHEROIDENE
12
U10
2
Ligand/Ion
UBIQUINONE-10
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , ALA L:124 , HIS L:153 , VAL L:241 , BCL L:308 , TYR M:210 , ALA M:213 , ALA M:214 , TRP M:252 , MET M:256
BINDING SITE FOR RESIDUE BPH L 301
02
AC2
SOFTWARE
ALA L:186 , LEU L:189 , HIS L:190 , LEU L:193 , GLU L:212 , ASP L:213 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , THR L:226 , ILE L:229 , PC1 M:410
BINDING SITE FOR RESIDUE U10 L 302
03
AC3
SOFTWARE
PHE L:97 , ALA L:124 , ALA L:127 , LEU L:131 , VAL L:157 , TYR L:162 , ASN L:166 , PHE L:167 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , PHE L:180 , SER L:244 , CYS L:247 , MET L:248 , BCL L:308 , TYR M:210 , BCL M:401 , BCL M:402 , U10 M:407
BINDING SITE FOR RESIDUE BCL L 303
04
AC4
SOFTWARE
HIS H:126 , GLU L:72 , TYR L:73 , LYS L:82 , THR M:21
BINDING SITE FOR RESIDUE PO4 L 304
05
AC5
SOFTWARE
GLN L:87 , TRP L:142
BINDING SITE FOR RESIDUE HTO L 305
06
AC6
SOFTWARE
THR H:63 , PHE H:64 , HOH H:426 , ALA L:198 , ASN L:199 , PRO L:200 , CDL M:409
BINDING SITE FOR RESIDUE GOL L 306
07
AC7
SOFTWARE
ALA L:78 , LEU L:80
BINDING SITE FOR RESIDUE GOL L 307
08
AC8
SOFTWARE
TYR L:128 , PHE L:146 , ILE L:150 , HIS L:153 , LEU L:154 , BPH L:301 , BCL L:303 , HOH L:426 , PHE M:197 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , GLY M:211 , LDA M:403
BINDING SITE FOR RESIDUE BCL L 308
09
AC9
SOFTWARE
GOL H:303 , GLN L:62 , LDA M:403
BINDING SITE FOR RESIDUE GOL L 309
10
BC1
SOFTWARE
LEU L:44 , ILE L:88 , ILE L:91 , CYS L:92
BINDING SITE FOR RESIDUE PO4 L 310
11
BC2
SOFTWARE
SER L:52 , TYR L:67 , LEU L:80 , ALA L:81 , GLY L:83 , HOH L:425
BINDING SITE FOR RESIDUE GOL L 311
12
BC3
SOFTWARE
TYR L:148
BINDING SITE FOR RESIDUE GOL L 312
13
BC4
SOFTWARE
ASP H:46 , GLY H:47 , SER L:4 , ARG L:7 , HOH L:414 , HOH L:424 , HOH L:428
BINDING SITE FOR RESIDUE GOL L 313
14
BC5
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , BCL L:303 , HOH L:403 , MET M:122 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:402 , BPH M:406 , SPO M:408
BINDING SITE FOR RESIDUE BCL M 401
15
BC6
SOFTWARE
VAL L:157 , PHE L:181 , BCL L:303 , LEU M:160 , THR M:186 , ASN M:187 , PHE M:189 , SER M:190 , ASN M:195 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , VAL M:276 , GLY M:280 , ILE M:284 , BCL M:401 , BPH M:406
BINDING SITE FOR RESIDUE BCL M 402
16
BC7
SOFTWARE
BCL L:308 , GOL L:309 , PRO M:200 , LEU M:204
BINDING SITE FOR RESIDUE LDA M 403
17
BC8
SOFTWARE
LEU M:38 , TRP M:41
BINDING SITE FOR RESIDUE LDA M 404
18
BC9
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE M 405
19
CC1
SOFTWARE
PHE L:181 , LEU L:185 , LEU L:189 , LEU L:219 , ALA M:125 , VAL M:126 , TRP M:129 , ALA M:149 , PHE M:150 , ALA M:273 , THR M:277 , BCL M:401 , BCL M:402
BINDING SITE FOR RESIDUE BPH M 406
20
CC2
SOFTWARE
PHE L:29 , TRP L:100 , BCL L:303 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , PHE M:258 , ASN M:259 , ALA M:260 , THR M:261 , ILE M:265
BINDING SITE FOR RESIDUE U10 M 407
21
CC3
SOFTWARE
PHE M:67 , ILE M:70 , GLY M:71 , TRP M:75 , SER M:119 , PHE M:120 , TRP M:157 , GLY M:161 , TRP M:171 , VAL M:175 , ILE M:179 , HIS M:182 , BCL M:401
BINDING SITE FOR RESIDUE SPO M 408
22
CC4
SOFTWARE
ALA H:16 , TYR H:30 , HOH H:418 , ASN L:199 , PRO L:200 , GOL L:306 , GLY M:143 , LYS M:144 , HIS M:145 , TRP M:148 , ARG M:267 , HOH M:502
BINDING SITE FOR RESIDUE CDL M 409
23
CC5
SOFTWARE
VAL L:220 , U10 L:302 , ALA M:27 , SER M:30 , GLY M:31 , VAL M:32 , LEU M:52
BINDING SITE FOR RESIDUE PC1 M 410
24
CC6
SOFTWARE
ASN M:28 , GLY M:53 , SER M:54
BINDING SITE FOR RESIDUE PO4 M 411
25
CC7
SOFTWARE
MET H:175 , ALA H:176 , ARG L:231 , TYR M:3 , ASN M:5 , SER M:8
BINDING SITE FOR RESIDUE PO4 M 412
26
CC8
SOFTWARE
LEU M:167 , MET M:168 , LEU M:285 , THR M:289
BINDING SITE FOR RESIDUE LDA M 413
27
CC9
SOFTWARE
GLN H:32 , TYR H:40 , ASN H:52 , GLY H:54 , PHE H:56 , GOL H:302 , ARG M:253 , MET M:256 , GLY M:257
BINDING SITE FOR RESIDUE GGD H 301
28
DC1
SOFTWARE
TRP H:21 , ALA H:25 , ILE H:28 , GGD H:301
BINDING SITE FOR RESIDUE GOL H 302
29
DC2
SOFTWARE
TRP H:21 , GOL L:309
BINDING SITE FOR RESIDUE GOL H 303
30
DC3
SOFTWARE
MET H:134 , LYS H:135 , ALA H:136 , ALA H:137 , ALA H:138 , GLY H:139 , PHE H:140 , GOL H:307 , HOH H:430 , TYR M:295
BINDING SITE FOR RESIDUE PO4 H 304
31
DC4
SOFTWARE
HIS H:128 , ASN H:129 , LYS H:132
BINDING SITE FOR RESIDUE GOL H 305
32
DC5
SOFTWARE
ARG H:177 , PHE H:178 , GLN H:194 , GLU H:230 , CYS H:234 , SER M:227 , ARG M:228 , GLY M:230 , ARG M:233
BINDING SITE FOR RESIDUE GOL H 306
33
DC6
SOFTWARE
ALA H:138 , GLY H:139 , PHE H:140 , PO4 H:304 , HOH H:430
BINDING SITE FOR RESIDUE GOL H 307
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d4in6h2 (H:36-250)
2a: SCOP_d4in6l_ (L:)
3a: SCOP_d4in6m_ (M:)
4a: SCOP_d4in6h1 (H:11-35)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
automated matches
(10)
Rhodobacter sphaeroides [TaxId: 1063]
(6)
1a
d4in6h2
H:36-250
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
L (light) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
2a
d4in6l_
L:
Protein domain
:
M (medium) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
3a
d4in6m_
M:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
automated matches
(10)
Protein domain
:
automated matches
(10)
Rhodobacter sphaeroides [TaxId: 1063]
(6)
4a
d4in6h1
H:11-35
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
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Asym.Unit (165 KB)
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