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4H83
Biol. Unit 2
Info
Asym.Unit (364 KB)
Biol.Unit 1 (356 KB)
Biol.Unit 2 (121 KB)
Biol.Unit 3 (124 KB)
Biol.Unit 4 (124 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME (EFI TARGET:502127)
Authors
:
J. Kim, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserma S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. M. Stead, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, J. A. Gerlt, S Enzyme Function Initiative (Efi)
Date
:
21 Sep 12 (Deposition) - 10 Oct 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Keywords
:
Structural Genomics, Enzyme Function Initiative, Tim Barrel, Racemase/Enolase, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Kim, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, M. Stead, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, J. A. Gerlt, S. C. Almo
Crystal Structure Of Mandelate Racemase/Muconate Lactonizin Enzyme
To Be Published
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
1b: BICARBONATE ION (BCTb)
2a: GLYCEROL (GOLa)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
4a: PHOSPHATE ION (PO4a)
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No.
Name
Count
Type
Full Name
1
BCT
1
Ligand/Ion
BICARBONATE ION
2
GOL
-1
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
PO4
-1
Ligand/Ion
PHOSPHATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:258 , TYR D:258 , HOH D:621 , HOH D:631 , TYR F:258 , HOH F:626
BINDING SITE FOR RESIDUE NA A 401
2
AC2
SOFTWARE
ASP A:215 , ASN A:217 , GLU A:241 , GLN A:268 , HOH A:625
BINDING SITE FOR RESIDUE NA A 402
3
AC3
SOFTWARE
ARG A:238 , THR A:335 , ILE A:336
BINDING SITE FOR RESIDUE BCT A 403
4
AC4
SOFTWARE
TYR B:258 , HOH B:596 , HOH B:608 , TYR C:258 , TYR E:258 , HOH E:615
BINDING SITE FOR RESIDUE NA B 401
5
AC5
SOFTWARE
ASP B:215 , GLU B:241 , GLN B:268 , HOH B:607 , HOH B:617
BINDING SITE FOR RESIDUE NA B 402
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d4h83a1 (A:20-147)
1b: SCOP_d4h83b1 (B:19-147)
1c: SCOP_d4h83c1 (C:19-147)
1d: SCOP_d4h83d1 (D:20-147)
1e: SCOP_d4h83e1 (E:19-147)
1f: SCOP_d4h83f1 (F:19-147)
2a: SCOP_d4h83a2 (A:148-385)
2b: SCOP_d4h83b2 (B:148-385)
2c: SCOP_d4h83c2 (C:148-386)
2d: SCOP_d4h83d2 (D:148-385)
2e: SCOP_d4h83e2 (E:148-386)
2f: SCOP_d4h83f2 (F:148-386)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Marine actinobacterium [TaxId: 312284]
(3)
1a
d4h83a1
A:20-147
1b
d4h83b1
B:19-147
1c
d4h83c1
C:19-147
1d
d4h83d1
D:20-147
1e
d4h83e1
E:19-147
1f
d4h83f1
F:19-147
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Marine actinobacterium [TaxId: 312284]
(3)
2a
d4h83a2
A:148-385
2b
d4h83b2
B:148-385
2c
d4h83c2
C:148-386
2d
d4h83d2
D:148-385
2e
d4h83e2
E:148-386
2f
d4h83f2
F:148-386
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (364 KB)
Header - Asym.Unit
Biol.Unit 1 (356 KB)
Header - Biol.Unit 1
Biol.Unit 2 (121 KB)
Header - Biol.Unit 2
Biol.Unit 3 (124 KB)
Header - Biol.Unit 3
Biol.Unit 4 (124 KB)
Header - Biol.Unit 4
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