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4FZL
Asym. Unit
Info
Asym.Unit (192 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (95 KB)
Biol.Unit 3 (186 KB)
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(1)
Title
:
HIGH RESOLUTION STRUCTURE OF TRUNCATED BACTERIOCIN SYRINGACIN M FROM PSEUDOMONAS SYRINGAE PV. TOMATO DC3000
Authors
:
A. W. Roszak, R. Grinter, J. R. Cogdell, D. Walker
Date
:
06 Jul 12 (Deposition) - 03 Oct 12 (Release) - 28 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.46
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Phosphatase, Calcium Binding, Lipid Ii Binding, Antimicrobial Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. Grinter, A. W. Roszak, R. J. Cogdell, J. J. Milner, D. Walker
The Crystal Structure Of The Lipid Ii-Degrading Bacteriocin Syringacin M Suggests Unexpected Evolutionary Relationships Between Colicin M-Like Bacteriocins.
J. Biol. Chem. V. 287 38876 2012
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
4a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
4
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:202 , ASN A:204 , ASP A:232 , EDO A:302 , HOH A:427 , HOH A:436
BINDING SITE FOR RESIDUE CA A 301
02
AC2
SOFTWARE
ASN A:204 , ASP A:232 , VAL A:233 , CA A:301 , HOH A:427 , HOH A:436
BINDING SITE FOR RESIDUE EDO A 302
03
AC3
SOFTWARE
ARG A:208 , ARG A:228 , ALA A:229 , PHE A:230 , HOH A:581
BINDING SITE FOR RESIDUE EDO A 303
04
AC4
SOFTWARE
ARG A:208
BINDING SITE FOR RESIDUE EDO A 304
05
AC5
SOFTWARE
LEU A:183 , ASP A:184 , VAL A:185 , HOH A:419
BINDING SITE FOR RESIDUE EDO A 305
06
AC6
SOFTWARE
ASN A:159 , VAL A:160 , ASP A:161 , HOH A:517
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
PRO A:257 , PHE A:258
BINDING SITE FOR RESIDUE EDO A 307
08
AC8
SOFTWARE
GLN A:112 , ILE A:113 , ASN A:114 , HOH A:678 , ILE B:74 , EDO B:304
BINDING SITE FOR RESIDUE CL A 308
09
AC9
SOFTWARE
TYR A:189 , ASP A:190 , HOH A:691
BINDING SITE FOR RESIDUE EDO A 309
10
BC1
SOFTWARE
LEU B:202 , ASN B:204 , ASP B:232 , EDO B:303 , HOH B:439 , HOH B:516
BINDING SITE FOR RESIDUE CA B 301
11
BC2
SOFTWARE
ASP B:214 , EDO B:308 , HOH B:522 , HOH B:528 , HOH B:529
BINDING SITE FOR RESIDUE MG B 302
12
BC3
SOFTWARE
ASN B:204 , ASP B:232 , VAL B:233 , CA B:301 , HOH B:439 , HOH B:441 , HOH B:516
BINDING SITE FOR RESIDUE EDO B 303
13
BC4
SOFTWARE
GLN A:112 , ASN A:114 , CL A:308 , HOH A:460 , GLY B:73 , LYS B:77 , GLU B:115 , HOH B:649
BINDING SITE FOR RESIDUE EDO B 304
14
BC5
SOFTWARE
ARG B:208 , ARG B:228 , ALA B:229 , HOH B:527
BINDING SITE FOR RESIDUE EDO B 305
15
BC6
SOFTWARE
ASP B:214 , ASN B:216 , ALA B:220 , TRP B:221 , THR B:222
BINDING SITE FOR RESIDUE EDO B 306
16
BC7
SOFTWARE
THR B:212 , THR B:222 , SER B:224 , HOH B:599
BINDING SITE FOR RESIDUE EDO B 307
17
BC8
SOFTWARE
THR B:180 , ASP B:214 , MG B:302 , HOH B:528 , HOH B:529
BINDING SITE FOR RESIDUE EDO B 308
18
BC9
SOFTWARE
ILE A:74 , GLN B:112 , ILE B:113 , ASN B:114
BINDING SITE FOR RESIDUE CL B 309
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (192 KB)
Header - Asym.Unit
Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
Biol.Unit 2 (95 KB)
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Biol.Unit 3 (186 KB)
Header - Biol.Unit 3
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