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4E1J
Asym. Unit
Info
Asym.Unit (301 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLYCEROL KINASE IN COMPLEX WITH GLYCEROL FROM SINORHIZOBIUM MELILOTI 1021
Authors
:
R. Agarwal, S. Chamala, B. Evans, R. Foti, A. Gizzi, B. Hillerich, A. Kar J. Lafleur, R. Siedel, G. Villigas, W. Zencheck, S. C. Almo, S. Swamina York Structural Genomics Research Consortium (Nysgrc)
Date
:
06 Mar 12 (Deposition) - 21 Mar 12 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Glycerol Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Agarwal, S. C. Almo, S. Swaminathan
Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021
To Be Published
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Hetero Components
(4, 41)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GOL
3
Ligand/Ion
GLYCEROL
3
MSE
35
Mod. Amino Acid
SELENOMETHIONINE
4
NA
2
Ligand/Ion
SODIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:105 , GLU A:106 , TRP A:125 , TYR A:157 , ASP A:266 , GLN A:267 , PHE A:291
BINDING SITE FOR RESIDUE GOL A 601
2
AC2
SOFTWARE
MSE A:23
BINDING SITE FOR RESIDUE NA A 602
3
AC3
SOFTWARE
ARG B:105 , GLU B:106 , TRP B:125 , TYR B:157 , ASP B:266 , GLN B:267 , PHE B:291
BINDING SITE FOR RESIDUE GOL B 601
4
AC4
SOFTWARE
ALA C:488
BINDING SITE FOR RESIDUE CL C 601
5
AC5
SOFTWARE
ARG C:105 , GLU C:106 , TRP C:125 , TYR C:157 , ASP C:266 , GLN C:267 , PHE C:291
BINDING SITE FOR RESIDUE GOL C 602
6
AC6
SOFTWARE
SER C:486 , HOH C:704
BINDING SITE FOR RESIDUE NA C 603
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FGGY_KINASES_2 (A:383-403,B:383-403,C:383-403,D:38...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FGGY_KINASES_2
PS00445
FGGY family of carbohydrate kinases signature 2.
GLPK_RHIME
360-380
4
A:383-403
B:383-403
C:383-403
D:383-403
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d4e1ja1 (A:12-274)
1b: SCOP_d4e1ja2 (A:275-519)
1c: SCOP_d4e1jb1 (B:26-274)
1d: SCOP_d4e1jb2 (B:275-519)
1e: SCOP_d4e1jc1 (C:7-274)
1f: SCOP_d4e1jc2 (C:275-519)
1g: SCOP_d4e1jd1 (D:26-274)
1h: SCOP_d4e1jd2 (D:275-519)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Sinorhizobium meliloti [TaxId: 266834]
(1)
1a
d4e1ja1
A:12-274
1b
d4e1ja2
A:275-519
1c
d4e1jb1
B:26-274
1d
d4e1jb2
B:275-519
1e
d4e1jc1
C:7-274
1f
d4e1jc2
C:275-519
1g
d4e1jd1
D:26-274
1h
d4e1jd2
D:275-519
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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