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Getting 'Biological Unit' information from database.
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4DOU
Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A SINGLE-CHAIN TRIMER OF HUMAN ADIPONECTIN GLOBULAR DOMAIN
Authors
:
X. Min, N. P. Walker, Z. Wang
Date
:
10 Feb 12 (Deposition) - 29 Feb 12 (Release) - 31 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Single-Chain Globular Domain, Calcium Binding, C1Q-Like Domain, Growth Factor, Serum, Hormone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Min, B. Lemon, J. Tang, Q. Liu, R. Zhang, N. Walker, Y. Li, Z. Wang
Crystal Structure Of A Single-Chain Trimer Of Human Adiponectin Globular Domain.
Febs Lett. V. 586 912 2012
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: GLYCEROL (GOLa)
4a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
1
Ligand/Ion
GLYCEROL
4
NA
1
Ligand/Ion
SODIUM ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:328 , GLN A:329 , ASP A:336 , ASN A:475 , VAL A:476 , ASP A:477
BINDING SITE FOR RESIDUE CA A 1001
2
AC2
SOFTWARE
ASN A:193 , VAL A:194 , ASP A:195 , ASP A:469 , GLN A:470 , ASP A:477
BINDING SITE FOR RESIDUE CA A 1002
3
AC3
SOFTWARE
ASP A:187 , GLN A:188 , ASP A:195 , ASN A:334 , VAL A:335 , ASP A:336
BINDING SITE FOR RESIDUE CA A 1003
4
AC4
SOFTWARE
GLN A:196 , GLN A:337 , GLN A:478 , HOH A:1113 , HOH A:1136 , HOH A:1225
BINDING SITE FOR RESIDUE NA A 1004
5
AC5
SOFTWARE
PRO A:411 , LYS A:431
BINDING SITE FOR RESIDUE GOL A 1005
6
AC6
SOFTWARE
TYR A:381 , TYR A:393 , LEU A:521 , TYR A:522 , HIS A:523 , HOH A:1251
BINDING SITE FOR RESIDUE EDO A 1006
7
AC7
SOFTWARE
LYS A:177 , LEU A:203 , HIS A:204 , PHE A:277 , HOH A:1232
BINDING SITE FOR RESIDUE EDO A 1007
8
AC8
SOFTWARE
TYR A:449 , VAL A:476
BINDING SITE FOR RESIDUE EDO A 1009
9
AC9
SOFTWARE
VAL A:215 , TYR A:216
BINDING SITE FOR RESIDUE EDO A 1010
[
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SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013273 (N334R, chain A, )
2: VAR_027395 (G349S, chain A, )
3: VAR_027396 (Y393H, chain A, )
4: VAR_013274 (R394C, chain A, )
5: VAR_013275 (V399M, chain A, )
6: VAR_013276 (I446T, chain A, )
7: VAR_013277 (R503S, chain A, )
8: VAR_013278 (H523P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013273
G
84
R
ADIPO_HUMAN
Unclassified
---
A
N
334
R
2
UniProt
VAR_027395
G
90
S
ADIPO_HUMAN
Polymorphism
62625753
A
G
349
S
3
UniProt
VAR_027396
Y
111
H
ADIPO_HUMAN
Polymorphism
17366743
A
Y
393
H
4
UniProt
VAR_013274
R
112
C
ADIPO_HUMAN
Disease (ADPND)
---
A
R
394
C
5
UniProt
VAR_013275
V
117
M
ADIPO_HUMAN
Polymorphism
---
A
V
399
M
6
UniProt
VAR_013276
I
164
T
ADIPO_HUMAN
Polymorphism
185847354
A
I
446
T
7
UniProt
VAR_013277
R
221
S
ADIPO_HUMAN
Polymorphism
138773406
A
R
503
S
8
UniProt
VAR_013278
H
241
P
ADIPO_HUMAN
Polymorphism
141205818
A
H
523
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: C1Q (A:391-525)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C1Q
PS50871
C1q domain profile.
ADIPO_HUMAN
108-244
1
A:391-525
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4doua1 (A:108-244)
1b: SCOP_d4doua2 (A:245-385)
1c: SCOP_d4doua3 (A:386-525)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(18)
1a
d4doua1
A:108-244
1b
d4doua2
A:245-385
1c
d4doua3
A:386-525
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Protein
Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (148 KB)
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