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4DO1
Asym. Unit
Info
Asym.Unit (299 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (78 KB)
Biol.Unit 4 (77 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURES OF 4-METHOXYBENZOATE BOUND CYP199A4
Authors
:
W. Zhou, S. G. Bell, W. Yang, A. B. H. Tan, R. Zhou, E. O. D. Johnson, A. Zhan L. -L. Wong
Date
:
09 Feb 12 (Deposition) - 15 Aug 12 (Release) - 15 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Cytochrome P450, Secondary Metabolites Biosynthesis, Transport, Catabolism, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. G. Bell, W. Yang, A. B. H. Tan, R. Zhou, E. O. D. Johnson, A. Zhang, W. Zhou, Z. Rao, L. -L. Wong
The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199A2 And Cyp199A4: Structural Changes On Substrate Binding And The Identification Of An Anion Binding Site
Dalton Trans V. 41 8703 2012
[
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Hetero Components
(5, 21)
Info
All Hetero Components
1a: 4-METHOXYBENZOIC ACID (ANNa)
1b: 4-METHOXYBENZOIC ACID (ANNb)
1c: 4-METHOXYBENZOIC ACID (ANNc)
1d: 4-METHOXYBENZOIC ACID (ANNd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
4d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANN
4
Ligand/Ion
4-METHOXYBENZOIC ACID
2
CL
4
Ligand/Ion
CHLORIDE ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
SO4
5
Ligand/Ion
SULFATE ION
[
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]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:97 , LEU A:98 , HIS A:105 , ARG A:109 , PHE A:160 , ALA A:248 , GLY A:249 , THR A:252 , THR A:253 , PHE A:298 , ARG A:300 , GLY A:350 , PHE A:351 , GLY A:352 , HIS A:356 , CYS A:358 , VAL A:359 , GLY A:360 , ALA A:364 , ANN A:502 , HOH A:637 , HOH A:643
BINDING SITE FOR RESIDUE HEM A 501
02
AC2
SOFTWARE
ARG A:92 , SER A:95 , ILE A:97 , PHE A:182 , SER A:244 , SER A:247 , ALA A:248 , PHE A:298 , HEM A:501 , HOH A:645
BINDING SITE FOR RESIDUE ANN A 502
03
AC3
SOFTWARE
ARG A:109 , SER A:113 , GOL A:504 , HOH A:652 , HOH A:817 , HOH A:952 , HOH A:1016 , LYS C:114
BINDING SITE FOR RESIDUE SO4 A 503
04
AC4
SOFTWARE
SER A:113 , LEU A:116 , SER A:117 , VAL A:359 , GLN A:361 , LEU A:362 , SO4 A:503 , HOH A:1091 , HOH A:1123
BINDING SITE FOR RESIDUE GOL A 504
05
AC5
SOFTWARE
ARG A:92 , TYR A:177 , GLN A:203
BINDING SITE FOR RESIDUE CL A 505
06
AC6
SOFTWARE
ILE B:97 , LEU B:98 , HIS B:105 , ARG B:109 , ALA B:248 , GLY B:249 , THR B:252 , THR B:253 , VAL B:295 , PHE B:298 , ARG B:300 , GLY B:350 , PHE B:351 , GLY B:352 , HIS B:356 , CYS B:358 , VAL B:359 , GLY B:360 , ALA B:364 , ANN B:502 , HOH B:661 , HOH B:1041
BINDING SITE FOR RESIDUE HEM B 501
07
AC7
SOFTWARE
ARG B:92 , SER B:95 , ILE B:97 , PHE B:182 , SER B:244 , SER B:247 , ALA B:248 , PHE B:298 , HEM B:501 , HOH B:643
BINDING SITE FOR RESIDUE ANN B 502
08
AC8
SOFTWARE
ARG B:109 , SER B:113 , GOL B:505 , HOH B:638 , HOH B:789 , HOH B:853 , LYS D:114
BINDING SITE FOR RESIDUE SO4 B 503
09
AC9
SOFTWARE
ARG B:78 , LYS B:86 , LYS B:87 , GLY B:316 , HOH B:1057 , HOH B:1067 , THR D:40
BINDING SITE FOR RESIDUE SO4 B 504
10
BC1
SOFTWARE
SER B:113 , LEU B:116 , SER B:117 , VAL B:359 , GLN B:361 , LEU B:362 , SO4 B:503 , HOH B:835 , HOH B:947
BINDING SITE FOR RESIDUE GOL B 505
11
BC2
SOFTWARE
ARG B:92 , TYR B:177 , GLN B:203 , HOH B:709
BINDING SITE FOR RESIDUE CL B 506
12
BC3
SOFTWARE
ILE C:97 , LEU C:98 , HIS C:105 , ARG C:109 , PHE C:160 , ALA C:248 , GLY C:249 , THR C:252 , THR C:253 , VAL C:295 , PHE C:298 , ARG C:300 , LEU C:323 , GLY C:350 , PHE C:351 , GLY C:352 , HIS C:356 , CYS C:358 , VAL C:359 , GLY C:360 , ALA C:364 , ANN C:502 , HOH C:627 , HOH C:629
BINDING SITE FOR RESIDUE HEM C 501
13
BC4
SOFTWARE
ARG C:92 , SER C:95 , LEU C:98 , PHE C:182 , SER C:244 , SER C:247 , ALA C:248 , PHE C:298 , HEM C:501 , HOH C:1013
BINDING SITE FOR RESIDUE ANN C 502
14
BC5
SOFTWARE
LYS A:114 , HOH A:976 , ARG C:109 , SER C:113 , GOL C:504 , HOH C:648 , HOH C:744 , HOH C:1144 , HOH C:1149
BINDING SITE FOR RESIDUE SO4 C 503
15
BC6
SOFTWARE
SER C:113 , LEU C:116 , SER C:117 , VAL C:359 , GLN C:361 , LEU C:362 , SO4 C:503 , HOH C:1130
BINDING SITE FOR RESIDUE GOL C 504
16
BC7
SOFTWARE
ARG C:92 , TYR C:177 , GLN C:203
BINDING SITE FOR RESIDUE CL C 505
17
BC8
SOFTWARE
ILE D:97 , LEU D:98 , HIS D:105 , ARG D:109 , PHE D:160 , ALA D:248 , GLY D:249 , THR D:252 , THR D:253 , VAL D:295 , PHE D:298 , ARG D:300 , LEU D:323 , GLY D:350 , PHE D:351 , GLY D:352 , HIS D:356 , CYS D:358 , VAL D:359 , GLY D:360 , ALA D:364 , ANN D:502 , HOH D:632 , HOH D:636
BINDING SITE FOR RESIDUE HEM D 501
18
BC9
SOFTWARE
ARG D:92 , SER D:95 , LEU D:98 , PHE D:182 , SER D:244 , SER D:247 , ALA D:248 , PHE D:298 , HEM D:501 , HOH D:1014
BINDING SITE FOR RESIDUE ANN D 502
19
CC1
SOFTWARE
LYS B:114 , ARG D:109 , SER D:113 , GOL D:504 , HOH D:644 , HOH D:843 , HOH D:1079
BINDING SITE FOR RESIDUE SO4 D 503
20
CC2
SOFTWARE
SER D:113 , LEU D:116 , SER D:117 , VAL D:359 , GLN D:361 , SO4 D:503 , HOH D:818
BINDING SITE FOR RESIDUE GOL D 504
21
CC3
SOFTWARE
ARG D:92 , TYR D:177 , GLN D:203
BINDING SITE FOR RESIDUE CL D 505
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4do1a_ (A:)
1b: SCOP_d4do1b_ (B:)
1c: SCOP_d4do1c_ (C:)
1d: SCOP_d4do1d_ (D:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Rhodopseudomonas palustris [TaxId: 316058]
(6)
1a
d4do1a_
A:
1b
d4do1b_
B:
1c
d4do1c_
C:
1d
d4do1d_
D:
[
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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