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Getting 'Exon' information from database.
4D0N
Asym. Unit
Info
Asym.Unit (99 KB)
Biol.Unit 1 (94 KB)
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(1)
Title
:
AKAP13 (AKAP-LBC) RHOGEF DOMAIN IN COMPLEX WITH RHOA
Authors
:
K. R. Abdul Azeez, L. Shrestha, T. Krojer, C. Allerston, F. Von Delft, C. Bountra, C. Arrowsmith, A. M. Edwards, S. Knapp, E. Klussmann, J. M.
Date
:
29 Apr 14 (Deposition) - 21 May 14 (Release) - 26 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cell Cycle, Akap13, Lbc, Akap-Lbc, Gef, Rhogef, Dh Domain, Ph Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. R. Abdul Azeez, S. Knapp, J. M. P. Fernandes, E. Klussmann, J. M. Elkins
The Crystal Structure Of The Rhoa : Akap-Lbc Dh-Ph Domain Complex.
Biochem. J. V. 464 231 2014
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:15 , CYS A:16 , GLY A:17 , LYS A:18 , THR A:19 , CYS A:20 , ALA A:61 , LYS A:118 , ASP A:120 , LEU A:121 , SER A:160 , ALA A:161 , LYS A:162 , HOH A:2007 , HOH A:2030 , HOH A:2074 , SO4 B:3342
BINDING SITE FOR RESIDUE GDP A1182
2
AC2
SOFTWARE
GLN B:2055 , ARG B:2059 , ASN B:2087 , ASN B:2093
BINDING SITE FOR RESIDUE SO4 B3341
3
AC3
SOFTWARE
GDP A:1182 , LYS B:1998 , ARG B:2163 , GLN B:2166
BINDING SITE FOR RESIDUE SO4 B3342
4
AC4
SOFTWARE
LYS B:1993 , LYS B:1994
BINDING SITE FOR RESIDUE SO4 B3343
5
AC5
SOFTWARE
ARG A:68 , SER B:2194
BINDING SITE FOR RESIDUE SO4 A1183
6
AC6
SOFTWARE
VAL B:2138 , ARG B:2139 , ARG B:2140
BINDING SITE FOR RESIDUE SO4 B3344
7
AC7
SOFTWARE
LYS A:7 , LEU A:72 , PRO A:75 , HOH A:2038 , HOH A:2076 , HOH A:3577 , HIS B:2108
BINDING SITE FOR RESIDUE EDO A1184
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: DH_2 (B:1998-2195)
2: PH_DOMAIN (B:2235-2337)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DH_2
PS50010
Dbl homology (DH) domain profile.
AKP13_HUMAN
1994-2191
1
B:1998-2195
2
PH_DOMAIN
PS50003
PH domain profile.
AKP13_HUMAN
2231-2333
1
B:2235-2337
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.27a (B:1970-2005)
Exon 1.28 (B:2005-2088)
Exon 1.29 (B:2089-2130)
Exon 1.30 (B:2131-2170)
Exon 1.31 (B:2170-2253)
Exon 1.32 (B:2253-2278)
Exon 1.33 (B:2279-2339)
Exon 1.34 (B:2339-2340)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.26/1.27a
2: Boundary 1.27a/1.28
3: Boundary 1.28/1.29
4: Boundary 1.29/1.30
5: Boundary 1.30/1.31
6: Boundary 1.31/1.32
7: Boundary 1.32/1.33
8: Boundary 1.33/1.34
9: Boundary 1.34/1.35
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000394518
1
ENSE00001302181
chr15:
85923871-85924029
159
AKP13_HUMAN
-
0
0
-
-
1.2
ENST00000394518
2
ENSE00001332196
chr15:
86028941-86028984
44
AKP13_HUMAN
1-11
11
0
-
-
1.4
ENST00000394518
4
ENSE00001332207
chr15:
86064659-86064806
148
AKP13_HUMAN
12-61
50
0
-
-
1.5a
ENST00000394518
5a
ENSE00001106086
chr15:
86076815-86077111
297
AKP13_HUMAN
61-160
100
0
-
-
1.6
ENST00000394518
6
ENSE00001255215
chr15:
86087003-86087186
184
AKP13_HUMAN
160-221
62
0
-
-
1.7
ENST00000394518
7
ENSE00001255210
chr15:
86118362-86118560
199
AKP13_HUMAN
221-287
67
0
-
-
1.8
ENST00000394518
8
ENSE00000924595
chr15:
86122161-86125338
3178
AKP13_HUMAN
288-1347
1060
0
-
-
1.9
ENST00000394518
9
ENSE00000924596
chr15:
86128933-86129054
122
AKP13_HUMAN
1347-1387
41
0
-
-
1.12
ENST00000394518
12
ENSE00001161572
chr15:
86182605-86182680
76
AKP13_HUMAN
1388-1413
26
0
-
-
1.13
ENST00000394518
13
ENSE00001183573
chr15:
86189049-86189185
137
AKP13_HUMAN
1413-1458
46
0
-
-
1.14
ENST00000394518
14
ENSE00001255357
chr15:
86198648-86199018
371
AKP13_HUMAN
1459-1582
124
0
-
-
1.15
ENST00000394518
15
ENSE00001183389
chr15:
86201768-86201821
54
AKP13_HUMAN
1582-1600
19
0
-
-
1.17
ENST00000394518
17
ENSE00001183388
chr15:
86207794-86207986
193
AKP13_HUMAN
1600-1664
65
0
-
-
1.18
ENST00000394518
18
ENSE00000924601
chr15:
86212953-86213061
109
AKP13_HUMAN
1665-1701
37
0
-
-
1.20
ENST00000394518
20
ENSE00001639921
chr15:
86225389-86225443
55
AKP13_HUMAN
1701-1719
19
0
-
-
1.21
ENST00000394518
21
ENSE00002188320
chr15:
86227972-86228104
133
AKP13_HUMAN
1719-1763
45
0
-
-
1.22
ENST00000394518
22
ENSE00001652051
chr15:
86236508-86236682
175
AKP13_HUMAN
1764-1822
59
0
-
-
1.23
ENST00000394518
23
ENSE00001711074
chr15:
86251250-86251317
68
AKP13_HUMAN
1822-1844
23
0
-
-
1.24
ENST00000394518
24
ENSE00001771305
chr15:
86253810-86253876
67
AKP13_HUMAN
1845-1867
23
0
-
-
1.25
ENST00000394518
25
ENSE00001719928
chr15:
86259019-86259154
136
AKP13_HUMAN
1867-1912
46
0
-
-
1.26
ENST00000394518
26
ENSE00001689611
chr15:
86260521-86260633
113
AKP13_HUMAN
1912-1950
39
0
-
-
1.27a
ENST00000394518
27a
ENSE00001798925
chr15:
86261238-86261390
153
AKP13_HUMAN
1950-2001
52
1
B:1970-2005
36
1.28
ENST00000394518
28
ENSE00001697029
chr15:
86262307-86262557
251
AKP13_HUMAN
2001-2084
84
1
B:2005-2088
84
1.29
ENST00000394518
29
ENSE00001649682
chr15:
86265222-86265347
126
AKP13_HUMAN
2085-2126
42
1
B:2089-2130
42
1.30
ENST00000394518
30
ENSE00001612910
chr15:
86265461-86265578
118
AKP13_HUMAN
2127-2166
40
1
B:2131-2170
40
1.31
ENST00000394518
31
ENSE00001803184
chr15:
86266303-86266551
249
AKP13_HUMAN
2166-2249
84
1
B:2170-2253
84
1.32
ENST00000394518
32
ENSE00001753596
chr15:
86269641-86269717
77
AKP13_HUMAN
2249-2274
26
1
B:2253-2278
26
1.33
ENST00000394518
33
ENSE00001735665
chr15:
86270297-86270478
182
AKP13_HUMAN
2275-2335
61
1
B:2279-2339
61
1.34
ENST00000394518
34
ENSE00001678821
chr15:
86270612-86270694
83
AKP13_HUMAN
2335-2363
29
1
B:2339-2340
2
1.35
ENST00000394518
35
ENSE00001629448
chr15:
86273744-86273938
195
AKP13_HUMAN
2363-2428
66
0
-
-
1.36
ENST00000394518
36
ENSE00001734761
chr15:
86278223-86278381
159
AKP13_HUMAN
2428-2481
54
0
-
-
1.37
ENST00000394518
37
ENSE00001762863
chr15:
86278791-86278861
71
AKP13_HUMAN
2481-2504
24
0
-
-
1.38
ENST00000394518
38
ENSE00001747445
chr15:
86279321-86279365
45
AKP13_HUMAN
2505-2519
15
0
-
-
1.39
ENST00000394518
39
ENSE00001637119
chr15:
86283453-86283503
51
AKP13_HUMAN
2520-2536
17
0
-
-
1.40
ENST00000394518
40
ENSE00001776231
chr15:
86284277-86284726
450
AKP13_HUMAN
2537-2686
150
0
-
-
1.41
ENST00000394518
41
ENSE00001594809
chr15:
86286723-86287056
334
AKP13_HUMAN
2687-2798
112
0
-
-
1.42b
ENST00000394518
42b
ENSE00001390831
chr15:
86287859-86292586
4728
AKP13_HUMAN
2798-2813
16
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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