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4CRI
Asym. Unit
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Asym.Unit (94 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 53BP1 TANDEM TUDOR DOMAINS IN COMPLEX WITH METHYLATED K810 RB PEPTIDE
Authors
:
T. Krojer, C. Johansson, C. Gileadi, O. Fedorov, S. Carr, N. B. La Thang M. Vollmar, L. Crawley, F. Von Delft, C. Bountra, C. H. Arrowsmith, A. U. Oppermann
Date
:
26 Feb 14 (Deposition) - 06 Aug 14 (Release) - 20 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Peptide Binding Protein, Tumour Suppressor Prb, 53Bp1
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Carr, S. Munro, L. Zalmas, O. Fedorov, C. Johansson, T. Krojer, C. A. Sagum, M. T. Bedford, U. Oppermann, N. B. La Thangue
Lysine Methylation-Dependent Binding Of 53Bp1 To The Prb Tumor Suppressor.
Proc. Natl. Acad. Sci. Usa V. 111 11341 2014
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-DIMETHYL-LYSINE (MLYa)
1b: N-DIMETHYL-LYSINE (MLYb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MLY
2
Mod. Amino Acid
N-DIMETHYL-LYSINE
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_038689 (G1488W, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_038689
G
1488
W
TP53B_HUMAN
Polymorphism
11554564
A/B
G
1488
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.24a (A:1485-1556 | B:1485-1556)
Exon 1.25b (A:1556-1604 | B:1556-1604)
Exon 2.24 (C:804-810 | D:805-810)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.23b/1.24a
2: Boundary 1.24a/1.25b
3: Boundary 1.25b/1.26
4: Boundary 2.23/2.24
5: Boundary 2.24/2.25
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000263801
1b
ENSE00001344404
chr15:
43802812-43802568
245
TP53B_HUMAN
-
0
0
-
-
1.4
ENST00000263801
4
ENSE00001713374
chr15:
43784666-43784482
185
TP53B_HUMAN
1-59
59
0
-
-
1.5
ENST00000263801
5
ENSE00001046179
chr15:
43784293-43784200
94
TP53B_HUMAN
60-91
32
0
-
-
1.6
ENST00000263801
6
ENSE00001046160
chr15:
43783951-43783867
85
TP53B_HUMAN
91-119
29
0
-
-
1.7
ENST00000263801
7
ENSE00001046169
chr15:
43773220-43773093
128
TP53B_HUMAN
119-162
44
0
-
-
1.8
ENST00000263801
8
ENSE00001046152
chr15:
43772215-43772057
159
TP53B_HUMAN
162-215
54
0
-
-
1.9
ENST00000263801
9
ENSE00001046208
chr15:
43771724-43771595
130
TP53B_HUMAN
215-258
44
0
-
-
1.10
ENST00000263801
10
ENSE00001046166
chr15:
43769957-43769791
167
TP53B_HUMAN
258-314
57
0
-
-
1.11
ENST00000263801
11
ENSE00001046193
chr15:
43767892-43767763
130
TP53B_HUMAN
314-357
44
0
-
-
1.12
ENST00000263801
12
ENSE00001046180
chr15:
43766965-43766871
95
TP53B_HUMAN
357-389
33
0
-
-
1.13
ENST00000263801
13
ENSE00001046161
chr15:
43762264-43762056
209
TP53B_HUMAN
389-458
70
0
-
-
1.14a
ENST00000263801
14a
ENSE00001046204
chr15:
43749416-43748090
1327
TP53B_HUMAN
459-901
443
0
-
-
1.15a
ENST00000263801
15a
ENSE00001046164
chr15:
43739683-43739564
120
TP53B_HUMAN
901-941
41
0
-
-
1.17
ENST00000263801
17
ENSE00001628086
chr15:
43738788-43738585
204
TP53B_HUMAN
941-1009
69
0
-
-
1.18a
ENST00000263801
18a
ENSE00001675565
chr15:
43733781-43733724
58
TP53B_HUMAN
1009-1028
20
0
-
-
1.19a
ENST00000263801
19a
ENSE00001595850
chr15:
43730614-43730522
93
TP53B_HUMAN
1028-1059
32
0
-
-
1.20b
ENST00000263801
20b
ENSE00001729133
chr15:
43724875-43724392
484
TP53B_HUMAN
1059-1220
162
0
-
-
1.21a
ENST00000263801
21a
ENSE00001648704
chr15:
43720366-43720214
153
TP53B_HUMAN
1221-1271
51
0
-
-
1.22a
ENST00000263801
22a
ENSE00001612038
chr15:
43714324-43714053
272
TP53B_HUMAN
1272-1362
91
0
-
-
1.23b
ENST00000263801
23b
ENSE00001657667
chr15:
43713372-43713223
150
TP53B_HUMAN
1362-1412
51
0
-
-
1.24a
ENST00000263801
24a
ENSE00001735071
chr15:
43712933-43712503
431
TP53B_HUMAN
1412-1556
145
2
A:1485-1556
B:1485-1556
72
72
1.25b
ENST00000263801
25b
ENSE00001666968
chr15:
43708614-43708423
192
TP53B_HUMAN
1556-1620
65
2
A:1556-1604
B:1556-1604
49
49
1.26
ENST00000263801
26
ENSE00001684657
chr15:
43708007-43707792
216
TP53B_HUMAN
1620-1692
73
0
-
-
1.28b
ENST00000263801
28b
ENSE00001734669
chr15:
43705532-43705317
216
TP53B_HUMAN
1692-1764
73
0
-
-
1.30
ENST00000263801
30
ENSE00001771292
chr15:
43701939-43701845
95
TP53B_HUMAN
1764-1795
32
0
-
-
1.31b
ENST00000263801
31b
ENSE00001727562
chr15:
43701294-43701095
200
TP53B_HUMAN
1796-1862
67
0
-
-
1.32
ENST00000263801
32
ENSE00001751396
chr15:
43700286-43700141
146
TP53B_HUMAN
1862-1911
50
0
-
-
1.33b
ENST00000263801
33b
ENSE00001841464
chr15:
43699768-43699407
362
TP53B_HUMAN
1911-1972
62
0
-
-
2.1b
ENST00000267163
1b
ENSE00002199946
chr13:
48877911-48878185
275
RB_HUMAN
1-46
46
0
-
-
2.2
ENST00000267163
2
ENSE00000939664
chr13:
48881416-48881542
127
RB_HUMAN
46-88
43
0
-
-
2.3
ENST00000267163
3
ENSE00000939665
chr13:
48916735-48916850
116
RB_HUMAN
89-127
39
0
-
-
2.4
ENST00000267163
4
ENSE00000939666
chr13:
48919216-48919335
120
RB_HUMAN
127-167
41
0
-
-
2.5
ENST00000267163
5
ENSE00000939667
chr13:
48921961-48921999
39
RB_HUMAN
167-180
14
0
-
-
2.6
ENST00000267163
6
ENSE00000939668
chr13:
48923092-48923159
68
RB_HUMAN
180-203
24
0
-
-
2.7a
ENST00000267163
7a
ENSE00000939669
chr13:
48934153-48934263
111
RB_HUMAN
203-240
38
0
-
-
2.8b
ENST00000267163
8b
ENSE00000939670
chr13:
48936951-48937093
143
RB_HUMAN
240-287
48
0
-
-
2.9
ENST00000267163
9
ENSE00000939671
chr13:
48939030-48939107
78
RB_HUMAN
288-313
26
0
-
-
2.10
ENST00000267163
10
ENSE00000939672
chr13:
48941630-48941739
110
RB_HUMAN
314-350
37
0
-
-
2.11
ENST00000267163
11
ENSE00000939673
chr13:
48942663-48942740
78
RB_HUMAN
350-376
27
0
-
-
2.12
ENST00000267163
12
ENSE00000939674
chr13:
48947541-48947628
88
RB_HUMAN
376-405
30
0
-
-
2.13
ENST00000267163
13
ENSE00000939675
chr13:
48951054-48951170
117
RB_HUMAN
406-444
39
0
-
-
2.14
ENST00000267163
14
ENSE00000939676
chr13:
48953730-48953786
57
RB_HUMAN
445-463
19
0
-
-
2.15
ENST00000267163
15
ENSE00000939677
chr13:
48954189-48954220
32
RB_HUMAN
464-474
11
0
-
-
2.16
ENST00000267163
16
ENSE00000939678
chr13:
48954301-48954377
77
RB_HUMAN
474-500
27
0
-
-
2.17
ENST00000267163
17
ENSE00000939679
chr13:
48955383-48955579
197
RB_HUMAN
500-565
66
0
-
-
2.19
ENST00000267163
19
ENSE00000939680
chr13:
49027129-49027247
119
RB_HUMAN
566-605
40
0
-
-
2.20b
ENST00000267163
20b
ENSE00000939681
chr13:
49030340-49030485
146
RB_HUMAN
605-654
50
0
-
-
2.21
ENST00000267163
21
ENSE00000939682
chr13:
49033824-49033969
146
RB_HUMAN
654-702
49
0
-
-
2.22
ENST00000267163
22
ENSE00000939683
chr13:
49037867-49037971
105
RB_HUMAN
703-737
35
0
-
-
2.23
ENST00000267163
23
ENSE00000939684
chr13:
49039134-49039247
114
RB_HUMAN
738-775
38
0
-
-
2.24
ENST00000267163
24
ENSE00000939685
chr13:
49039341-49039504
164
RB_HUMAN
776-830
55
2
C:804-810
D:805-810
7
6
2.25
ENST00000267163
25
ENSE00001003962
chr13:
49047496-49047526
31
RB_HUMAN
830-840
11
0
-
-
2.26c
ENST00000267163
26c
ENSE00000939686
chr13:
49050837-49050979
143
RB_HUMAN
841-888
48
0
-
-
2.27
ENST00000267163
27
ENSE00000939687
chr13:
49051491-49051540
50
RB_HUMAN
888-905
18
0
-
-
2.28c
ENST00000267163
28c
ENSE00001241067
chr13:
49054134-49056122
1989
RB_HUMAN
905-928
24
0
-
-
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