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4CQF
Biol. Unit 3
Info
Asym.Unit (556 KB)
Biol.Unit 1 (139 KB)
Biol.Unit 2 (142 KB)
Biol.Unit 3 (145 KB)
Biol.Unit 4 (139 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8 COMPLEXED WITH A MERCAPTOACETAMIDE INHIBITOR
Authors
:
M. Marek, C. Romier
Date
:
14 Feb 14 (Deposition) - 02 Apr 14 (Release) - 08 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase, Structural Protein, Eukaryotes, Platyhelminths, Epigenetics, Histone Deacetylases, Inhibition
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. A. Stolfa, M. Marek, J. Lancelot, A. T. Hauser, A. Walter, E. Leproult, J. Melesina, T. Rumpf, J. M. Wurtz, J. Cavarelli, W. Sippl R. J. Pierce, C. Romier, M. Jung
Molecular Basis For The Anti-Parasitic Activity Of A Mercaptoacetamide Derivative That Inhibits Histone Deacetylase 8 (Hdac8) From The Human Pathogen Schistosoma Mansoni
J. Mol. Biol. V. 426 3442 2014
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: 6-(2-MERCAPTOACETYLAMINO)-N-PHENYL... (9Z8a)
1b: 6-(2-MERCAPTOACETYLAMINO)-N-PHENYL... (9Z8b)
1c: 6-(2-MERCAPTOACETYLAMINO)-N-PHENYL... (9Z8c)
1d: 6-(2-MERCAPTOACETYLAMINO)-N-PHENYL... (9Z8d)
2a: DIMETHYLFORMAMIDE (DMFa)
2b: DIMETHYLFORMAMIDE (DMFb)
2c: DIMETHYLFORMAMIDE (DMFc)
2d: DIMETHYLFORMAMIDE (DMFd)
2e: DIMETHYLFORMAMIDE (DMFe)
2f: DIMETHYLFORMAMIDE (DMFf)
2g: DIMETHYLFORMAMIDE (DMFg)
2h: DIMETHYLFORMAMIDE (DMFh)
2i: DIMETHYLFORMAMIDE (DMFi)
2j: DIMETHYLFORMAMIDE (DMFj)
2k: DIMETHYLFORMAMIDE (DMFk)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
9Z8
1
Ligand/Ion
6-(2-MERCAPTOACETYLAMINO)-N-PHENYLHEXANAMIDE
2
DMF
4
Ligand/Ion
DIMETHYLFORMAMIDE
3
GOL
3
Ligand/Ion
GLYCEROL
4
K
-1
Ligand/Ion
POTASSIUM ION
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: BC7 (SOFTWARE)
02: BC8 (SOFTWARE)
03: BC9 (SOFTWARE)
04: CC1 (SOFTWARE)
05: CC2 (SOFTWARE)
06: CC3 (SOFTWARE)
07: CC4 (SOFTWARE)
08: CC5 (SOFTWARE)
09: CC6 (SOFTWARE)
10: CC7 (SOFTWARE)
11: CC8 (SOFTWARE)
12: DC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
BC7
SOFTWARE
ASP C:186 , HIS C:188 , ASP C:285 , 9Z8 C:700
BINDING SITE FOR RESIDUE ZN C 500
02
BC8
SOFTWARE
ASP C:184 , ASP C:186 , HIS C:188 , SER C:207 , VAL C:208
BINDING SITE FOR RESIDUE K C 600
03
BC9
SOFTWARE
PHE C:197 , SER C:200 , VAL C:203 , SER C:243 , HOH C:2065
BINDING SITE FOR RESIDUE K C 601
04
CC1
SOFTWARE
TYR C:99 , ASP C:100 , HIS C:141 , HIS C:142 , GLY C:150 , PHE C:151 , ASP C:186 , HIS C:188 , PHE C:216 , TYR C:341 , ZN C:500 , HOH C:2044 , HOH C:2102
BINDING SITE FOR RESIDUE 9Z8 C 700
05
CC2
SOFTWARE
SER C:18 , PRO C:19 , LYS C:20 , PHE C:21 , ASP C:100 , PHE C:104 , TYR C:110 , PHE C:151 , TYR C:153
BINDING SITE FOR RESIDUE DMF C 800
06
CC3
SOFTWARE
TYR C:7 , MET C:29 , ASP C:30 , ASN C:33 , ILE C:38
BINDING SITE FOR RESIDUE DMF C 801
07
CC4
SOFTWARE
ARG C:43 , HOH C:2022 , ASP D:93 , SER D:94 , SER D:96
BINDING SITE FOR RESIDUE DMF C 802
08
CC5
SOFTWARE
GLU C:131 , LYS C:330 , VAL C:331 , VAL C:361
BINDING SITE FOR RESIDUE DMF C 803
09
CC6
SOFTWARE
CYS C:15 , PHE C:21 , GLY C:22 , ARG C:24 , TYR C:25 , TYR C:110 , TRP C:136 , TRP C:140 , HOH C:2008
BINDING SITE FOR RESIDUE GOL C 900
10
CC7
SOFTWARE
HIS C:189 , GLU C:194 , THR C:219 , GLY C:220 , THR C:221 , PHE C:233 , LEU C:234 , HOH C:2076
BINDING SITE FOR RESIDUE GOL C 901
11
CC8
SOFTWARE
TYR C:301 , ARG C:352 , MET C:366 , THR C:367 , ILE C:368
BINDING SITE FOR RESIDUE GOL C 902
12
DC7
SOFTWARE
PRO C:291 , HIS C:292 , SER D:51 , ARG D:54
BINDING SITE FOR RESIDUE GOL D 901
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Chain C
Asymmetric Unit 1
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Asym.Unit (556 KB)
Header - Asym.Unit
Biol.Unit 1 (139 KB)
Header - Biol.Unit 1
Biol.Unit 2 (142 KB)
Header - Biol.Unit 2
Biol.Unit 3 (145 KB)
Header - Biol.Unit 3
Biol.Unit 4 (139 KB)
Header - Biol.Unit 4
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