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4CHB
Asym. Unit
Info
Asym.Unit (201 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN KLHL2 KELCH DOMAIN IN COMPLEX WITH A WNK4 PEPTIDE
Authors
:
F. J. Sorrell, F. R. Schumacher, T. Kurz, D. R. Alessi, J. Newman, C. D. O. P. Canning, J. Kopec, E. Williams, T. Krojer, F. Von Delft, C. H. Arrow A. M. Edwards, C. Bountra, A. Bullock
Date
:
29 Nov 13 (Deposition) - 08 Jan 14 (Release) - 22 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.56
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Signaling Protein-Transferase Complex, Klhl3, Ubiquitin, Adaptor Protein, Protein-Binding, Kelch Repeat, Wnk Signalling Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Schumacher, F. J. Sorrell, D. R. Alessi, A. N. Bullock, T. Kurz
Structural And Biochemical Characterisation Of The Klhl3- Wnk Kinase Interaction Important In Blood Pressure Regulation.
Biochem. J. V. 460 237 2014
[
close entry info
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: DODECAETHYLENE GLYCOL (12Pa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
12P
1
Ligand/Ion
DODECAETHYLENE GLYCOL
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:343 , ALA A:357 , GLY A:359 , VAL A:367 , THR A:369 , ASP A:371 , HOH A:2023
BINDING SITE FOR RESIDUE EDO A1592
02
AC2
SOFTWARE
ARG A:368 , ARG A:389 , HOH A:2035 , HOH A:2051 , HOH A:2159 , ARG B:368 , ARG B:389 , HOH B:2024 , HOH B:2134
BINDING SITE FOR RESIDUE SO4 B1592
03
AC3
SOFTWARE
ARG A:368 , ARG A:389 , HOH A:2036 , HOH A:2159
BINDING SITE FOR RESIDUE SO4 A1593
04
AC4
SOFTWARE
PRO A:340 , SER A:341 , ARG A:343 , ASP A:371 , SER A:382 , HOH A:2038 , HOH A:2039 , ASN B:362 , SER B:364 , LEU B:365
BINDING SITE FOR RESIDUE EDO A1594
05
AC5
SOFTWARE
LEU A:497 , ASP A:517 , ARG A:524 , VAL A:526 , TYR A:563 , ASN B:495 , ASP B:517 , ARG B:524 , VAL B:526 , TYR B:563
BINDING SITE FOR RESIDUE 12P A1595
06
AC6
SOFTWARE
SER A:341 , ARG A:343 , ASN A:362 , SER B:341 , ARG B:343 , ASN B:362
BINDING SITE FOR RESIDUE SO4 A1596
07
AC7
SOFTWARE
ARG B:343 , ALA B:357 , GLY B:359 , VAL B:367 , THR B:369 , ASP B:371 , HOH B:2017
BINDING SITE FOR RESIDUE EDO B1593
08
AC8
SOFTWARE
ASN A:362 , SER A:364 , LEU A:365 , HOH A:2033 , PRO B:340 , SER B:341 , ARG B:343 , ASP B:371
BINDING SITE FOR RESIDUE EDO B1594
09
AC9
SOFTWARE
ARG B:368 , ARG B:389 , HOH B:2134
BINDING SITE FOR RESIDUE SO4 B1595
10
BC1
SOFTWARE
LEU A:365 , ARG A:366 , ARG A:389 , ASP A:409 , GLU C:557
BINDING SITE FOR RESIDUE EDO C1567
11
BC2
SOFTWARE
LEU B:365 , ARG B:366 , ARG B:389 , ASP B:409 , GLY B:410 , GLU D:557
BINDING SITE FOR RESIDUE EDO D1567
[
close Site info
]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_017588 (E562K, chain C/D, )
2: VAR_017589 (D564A, chain C/D, )
3: VAR_017590 (Q565E, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017588
E
562
K
WNK4_HUMAN
Disease (PHA2B)
---
C/D
E
562
K
2
UniProt
VAR_017589
D
564
A
WNK4_HUMAN
Disease (PHA2B)
---
C/D
D
564
A
3
UniProt
VAR_017590
Q
565
E
WNK4_HUMAN
Disease (PHA2B)
---
C/D
Q
565
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(1, 2)
Info
All Exons
Exon 1.7 (C:557-566 | D:557-566)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000246914
1
ENSE00001216260
chr17:
40932696-40933334
639
WNK4_HUMAN
1-206
206
0
-
-
1.2
ENST00000246914
2
ENSE00000865417
chr17:
40934776-40934948
173
WNK4_HUMAN
207-264
58
0
-
-
1.3b
ENST00000246914
3b
ENSE00000947955
chr17:
40935955-40936175
221
WNK4_HUMAN
264-338
75
0
-
-
1.4
ENST00000246914
4
ENSE00000947956
chr17:
40936440-40936597
158
WNK4_HUMAN
338-390
53
0
-
-
1.5
ENST00000246914
5
ENSE00000947957
chr17:
40937115-40937203
89
WNK4_HUMAN
391-420
30
0
-
-
1.6
ENST00000246914
6
ENSE00000947958
chr17:
40937284-40937500
217
WNK4_HUMAN
420-492
73
0
-
-
1.7
ENST00000246914
7
ENSE00000947959
chr17:
40939296-40939560
265
WNK4_HUMAN
493-581
89
2
C:557-566
D:557-566
10
10
1.8
ENST00000246914
8
ENSE00000947960
chr17:
40939796-40939917
122
WNK4_HUMAN
581-621
41
0
-
-
1.9
ENST00000246914
9
ENSE00000947961
chr17:
40940148-40940206
59
WNK4_HUMAN
622-641
20
0
-
-
1.10
ENST00000246914
10
ENSE00000947962
chr17:
40940308-40940425
118
WNK4_HUMAN
641-680
40
0
-
-
1.11
ENST00000246914
11
ENSE00000947963
chr17:
40940699-40940815
117
WNK4_HUMAN
681-719
39
0
-
-
1.12
ENST00000246914
12
ENSE00000947964
chr17:
40945610-40945747
138
WNK4_HUMAN
720-765
46
0
-
-
1.13
ENST00000246914
13
ENSE00000947965
chr17:
40946632-40946686
55
WNK4_HUMAN
766-784
19
0
-
-
1.14b
ENST00000246914
14b
ENSE00001380389
chr17:
40946790-40947400
611
WNK4_HUMAN
784-987
204
0
-
-
1.15
ENST00000246914
15
ENSE00000947967
chr17:
40947479-40947539
61
WNK4_HUMAN
988-1008
21
0
-
-
1.16b
ENST00000246914
16b
ENSE00000947968
chr17:
40947643-40948051
409
WNK4_HUMAN
1008-1144
137
0
-
-
1.17b
ENST00000246914
17b
ENSE00001376713
chr17:
40948141-40948340
200
WNK4_HUMAN
1144-1211
68
0
-
-
1.18
ENST00000246914
18
ENSE00000947970
chr17:
40948499-40948596
98
WNK4_HUMAN
1211-1243
33
0
-
-
1.19
ENST00000246914
19
ENSE00000947971
chr17:
40948704-40949061
358
WNK4_HUMAN
1244-1244
1
0
-
-
[
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SCOP Domains
(0, 0)
Info
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View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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