PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4CH9
Biol. Unit 2
Info
Asym.Unit (200 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (98 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN KLHL3 KELCH DOMAIN IN COMPLEX WITH A WNK4 PEPTIDE
Authors
:
F. J. Sorrell, F. R. Schumacher, T. Kurz, D. R. Alessi, J. Newman, S. Goub R. Chalk, J. Kopec, C. Tallant, E. Williams, T. Krojer, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock
Date
:
29 Nov 13 (Deposition) - 08 Jan 14 (Release) - 28 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Signaling Protein-Transferase Complex, Klhl3, Ubiquitin, Adaptor Protein, Protein-Binding, Kelch Repeat, Wnk Signalling Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Schumacher, F. J. Sorrell, D. R. Alessi, A. N. Bullock, T. Kurz
Structural And Biochemical Characterisation Of The Klhl3- Wnk Kinase Interaction Important In Blood Pressure Regulation.
Biochem. J. V. 460 237 2014
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:362 , ARG A:383 , HOH A:2297
BINDING SITE FOR RESIDUE SO4 A1586
2
AC2
SOFTWARE
SER A:433 , SER A:481 , HIS A:498 , ARG A:528 , ASN A:529 , TYR A:577 , ASP C:564
BINDING SITE FOR RESIDUE EDO A1587
3
AC3
SOFTWARE
ARG A:339 , ARG A:360 , SER A:385 , HOH A:2083
BINDING SITE FOR RESIDUE CL A1588
4
AC5
SOFTWARE
LYS A:417 , SER B:335 , ARG B:337 , ASN B:356 , HOH B:2038 , HOH B:2260
BINDING SITE FOR RESIDUE SO4 B1587
[
close Site info
]
SAPs(SNPs)/Variants
(29, 29)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_067506 (Q309R, chain A, )
02: VAR_067507 (F322C, chain A, )
03: VAR_067508 (R336I, chain A, )
04: VAR_067509 (A340V, chain A, )
05: VAR_067510 (V361M, chain A, )
06: VAR_067511 (R362W, chain A, )
07: VAR_067512 (R384Q, chain A, )
08: VAR_067513 (R384W, chain A, )
09: VAR_067514 (L387P, chain A, )
10: VAR_067515 (A398V, chain A, )
11: VAR_067516 (S410L, chain A, )
12: VAR_067517 (P426L, chain A, )
13: VAR_067518 (M427T, chain A, )
14: VAR_067519 (R431Q, chain A, )
15: VAR_067520 (S432N, chain A, )
16: VAR_067521 (S433G, chain A, )
17: VAR_067522 (S433N, chain A, )
18: VAR_067523 (V438I, chain A, )
19: VAR_067524 (A494T, chain A, )
20: VAR_067525 (G500V, chain A, )
21: VAR_067526 (P501T, chain A, )
22: VAR_067527 (R528C, chain A, )
23: VAR_067528 (R528H, chain A, )
24: VAR_067529 (N529K, chain A, )
25: VAR_067530 (Y557C, chain A, )
26: VAR_017588 (E562K, chain C, )
27: VAR_017589 (D564A, chain C, )
28: VAR_017590 (Q565E, chain C, )
29: VAR_067531 (R575W, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_067506
Q
309
R
KLHL3_HUMAN
Disease (PHA2D)
---
A
Q
309
R
02
UniProt
VAR_067507
F
322
C
KLHL3_HUMAN
Disease (PHA2D)
---
A
F
322
C
03
UniProt
VAR_067508
R
336
I
KLHL3_HUMAN
Disease (PHA2D)
---
A
R
336
I
04
UniProt
VAR_067509
A
340
V
KLHL3_HUMAN
Disease (PHA2D)
---
A
A
340
V
05
UniProt
VAR_067510
V
361
M
KLHL3_HUMAN
Disease (PHA2D)
---
A
V
361
M
06
UniProt
VAR_067511
R
362
W
KLHL3_HUMAN
Disease (PHA2D)
200892557
A
R
362
W
07
UniProt
VAR_067512
R
384
Q
KLHL3_HUMAN
Disease (PHA2D)
---
A
R
384
Q
08
UniProt
VAR_067513
R
384
W
KLHL3_HUMAN
Disease (PHA2D)
---
A
R
384
W
09
UniProt
VAR_067514
L
387
P
KLHL3_HUMAN
Disease (PHA2D)
---
A
L
387
P
10
UniProt
VAR_067515
A
398
V
KLHL3_HUMAN
Disease (PHA2D)
---
A
A
398
V
11
UniProt
VAR_067516
S
410
L
KLHL3_HUMAN
Disease (PHA2D)
---
A
S
410
L
12
UniProt
VAR_067517
P
426
L
KLHL3_HUMAN
Disease (PHA2D)
---
A
P
426
L
13
UniProt
VAR_067518
M
427
T
KLHL3_HUMAN
Disease (PHA2D)
---
A
M
427
T
14
UniProt
VAR_067519
R
431
Q
KLHL3_HUMAN
Disease (PHA2D)
---
A
R
431
Q
15
UniProt
VAR_067520
S
432
N
KLHL3_HUMAN
Disease (PHA2D)
---
A
S
432
N
16
UniProt
VAR_067521
S
433
G
KLHL3_HUMAN
Disease (PHA2D)
---
A
S
433
G
17
UniProt
VAR_067522
S
433
N
KLHL3_HUMAN
Disease (PHA2D)
---
A
S
433
N
18
UniProt
VAR_067523
V
438
I
KLHL3_HUMAN
Unclassified
---
A
V
438
I
19
UniProt
VAR_067524
A
494
T
KLHL3_HUMAN
Disease (PHA2D)
---
A
A
494
T
20
UniProt
VAR_067525
G
500
V
KLHL3_HUMAN
Disease (PHA2D)
---
A
G
500
V
21
UniProt
VAR_067526
P
501
T
KLHL3_HUMAN
Disease (PHA2D)
---
A
P
501
T
22
UniProt
VAR_067527
R
528
C
KLHL3_HUMAN
Disease (PHA2D)
---
A
R
528
C
23
UniProt
VAR_067528
R
528
H
KLHL3_HUMAN
Disease (PHA2D)
---
A
R
528
H
24
UniProt
VAR_067529
N
529
K
KLHL3_HUMAN
Disease (PHA2D)
---
A
N
529
K
25
UniProt
VAR_067530
Y
557
C
KLHL3_HUMAN
Disease (PHA2D)
---
A
Y
557
C
26
UniProt
VAR_017588
E
562
K
WNK4_HUMAN
Disease (PHA2B)
---
C
E
562
K
27
UniProt
VAR_017589
D
564
A
WNK4_HUMAN
Disease (PHA2B)
---
C
D
564
A
28
UniProt
VAR_017590
Q
565
E
WNK4_HUMAN
Disease (PHA2B)
---
C
Q
565
E
29
UniProt
VAR_067531
R
575
W
KLHL3_HUMAN
Disease (PHA2D)
---
A
R
575
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (200 KB)
Header - Asym.Unit
Biol.Unit 1 (98 KB)
Header - Biol.Unit 1
Biol.Unit 2 (98 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4CH9
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help