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4CH9
Asym. Unit
Info
Asym.Unit (200 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (98 KB)
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Title
:
CRYSTAL STRUCTURE OF THE HUMAN KLHL3 KELCH DOMAIN IN COMPLEX WITH A WNK4 PEPTIDE
Authors
:
F. J. Sorrell, F. R. Schumacher, T. Kurz, D. R. Alessi, J. Newman, S. Goub R. Chalk, J. Kopec, C. Tallant, E. Williams, T. Krojer, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock
Date
:
29 Nov 13 (Deposition) - 08 Jan 14 (Release) - 28 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Signaling Protein-Transferase Complex, Klhl3, Ubiquitin, Adaptor Protein, Protein-Binding, Kelch Repeat, Wnk Signalling Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Schumacher, F. J. Sorrell, D. R. Alessi, A. N. Bullock, T. Kurz
Structural And Biochemical Characterisation Of The Klhl3- Wnk Kinase Interaction Important In Blood Pressure Regulation.
Biochem. J. V. 460 237 2014
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
3
Ligand/Ion
SULFATE ION
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:362 , ARG A:383 , HOH A:2297
BINDING SITE FOR RESIDUE SO4 A1586
2
AC2
SOFTWARE
SER A:433 , SER A:481 , HIS A:498 , ARG A:528 , ASN A:529 , TYR A:577 , ASP C:564
BINDING SITE FOR RESIDUE EDO A1587
3
AC3
SOFTWARE
ARG A:339 , ARG A:360 , SER A:385 , HOH A:2083
BINDING SITE FOR RESIDUE CL A1588
4
AC4
SOFTWARE
ARG B:362 , ARG B:383
BINDING SITE FOR RESIDUE SO4 B1586
5
AC5
SOFTWARE
LYS A:417 , SER B:335 , ARG B:337 , ASN B:356 , HOH B:2038 , HOH B:2260
BINDING SITE FOR RESIDUE SO4 B1587
6
AC6
SOFTWARE
ARG B:337 , ALA B:351 , GLY B:353 , VAL B:361 , THR B:363 , ASP B:365 , HOH B:2037
BINDING SITE FOR RESIDUE EDO B1588
7
AC7
SOFTWARE
ARG B:339 , ARG B:360 , SER B:385 , HOH B:2087
BINDING SITE FOR RESIDUE CL B1589
[
close Site info
]
SAPs(SNPs)/Variants
(29, 58)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_067506 (Q309R, chain A/B, )
02: VAR_067507 (F322C, chain A/B, )
03: VAR_067508 (R336I, chain A/B, )
04: VAR_067509 (A340V, chain A/B, )
05: VAR_067510 (V361M, chain A/B, )
06: VAR_067511 (R362W, chain A/B, )
07: VAR_067512 (R384Q, chain A/B, )
08: VAR_067513 (R384W, chain A/B, )
09: VAR_067514 (L387P, chain A/B, )
10: VAR_067515 (A398V, chain A/B, )
11: VAR_067516 (S410L, chain A/B, )
12: VAR_067517 (P426L, chain A/B, )
13: VAR_067518 (M427T, chain A/B, )
14: VAR_067519 (R431Q, chain A/B, )
15: VAR_067520 (S432N, chain A/B, )
16: VAR_067521 (S433G, chain A/B, )
17: VAR_067522 (S433N, chain A/B, )
18: VAR_067523 (V438I, chain A/B, )
19: VAR_067524 (A494T, chain A/B, )
20: VAR_067525 (G500V, chain A/B, )
21: VAR_067526 (P501T, chain A/B, )
22: VAR_067527 (R528C, chain A/B, )
23: VAR_067528 (R528H, chain A/B, )
24: VAR_067529 (N529K, chain A/B, )
25: VAR_067530 (Y557C, chain A/B, )
26: VAR_017588 (E562K, chain C/D, )
27: VAR_017589 (D564A, chain C/D, )
28: VAR_017590 (Q565E, chain C/D, )
29: VAR_067531 (R575W, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_067506
Q
309
R
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
Q
309
R
02
UniProt
VAR_067507
F
322
C
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
F
322
C
03
UniProt
VAR_067508
R
336
I
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
R
336
I
04
UniProt
VAR_067509
A
340
V
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
A
340
V
05
UniProt
VAR_067510
V
361
M
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
V
361
M
06
UniProt
VAR_067511
R
362
W
KLHL3_HUMAN
Disease (PHA2D)
200892557
A/B
R
362
W
07
UniProt
VAR_067512
R
384
Q
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
R
384
Q
08
UniProt
VAR_067513
R
384
W
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
R
384
W
09
UniProt
VAR_067514
L
387
P
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
L
387
P
10
UniProt
VAR_067515
A
398
V
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
A
398
V
11
UniProt
VAR_067516
S
410
L
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
S
410
L
12
UniProt
VAR_067517
P
426
L
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
P
426
L
13
UniProt
VAR_067518
M
427
T
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
M
427
T
14
UniProt
VAR_067519
R
431
Q
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
R
431
Q
15
UniProt
VAR_067520
S
432
N
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
S
432
N
16
UniProt
VAR_067521
S
433
G
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
S
433
G
17
UniProt
VAR_067522
S
433
N
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
S
433
N
18
UniProt
VAR_067523
V
438
I
KLHL3_HUMAN
Unclassified
---
A/B
V
438
I
19
UniProt
VAR_067524
A
494
T
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
A
494
T
20
UniProt
VAR_067525
G
500
V
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
G
500
V
21
UniProt
VAR_067526
P
501
T
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
P
501
T
22
UniProt
VAR_067527
R
528
C
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
R
528
C
23
UniProt
VAR_067528
R
528
H
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
R
528
H
24
UniProt
VAR_067529
N
529
K
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
N
529
K
25
UniProt
VAR_067530
Y
557
C
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
Y
557
C
26
UniProt
VAR_017588
E
562
K
WNK4_HUMAN
Disease (PHA2B)
---
C/D
E
562
K
27
UniProt
VAR_017589
D
564
A
WNK4_HUMAN
Disease (PHA2B)
---
C/D
D
564
A
28
UniProt
VAR_017590
Q
565
E
WNK4_HUMAN
Disease (PHA2B)
---
C/D
Q
565
E
29
UniProt
VAR_067531
R
575
W
KLHL3_HUMAN
Disease (PHA2D)
---
A/B
R
575
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(1, 2)
Info
All Exons
Exon 1.7 (C:557-565 | D:557-565)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000246914
1
ENSE00001216260
chr17:
40932696-40933334
639
WNK4_HUMAN
1-206
206
0
-
-
1.2
ENST00000246914
2
ENSE00000865417
chr17:
40934776-40934948
173
WNK4_HUMAN
207-264
58
0
-
-
1.3b
ENST00000246914
3b
ENSE00000947955
chr17:
40935955-40936175
221
WNK4_HUMAN
264-338
75
0
-
-
1.4
ENST00000246914
4
ENSE00000947956
chr17:
40936440-40936597
158
WNK4_HUMAN
338-390
53
0
-
-
1.5
ENST00000246914
5
ENSE00000947957
chr17:
40937115-40937203
89
WNK4_HUMAN
391-420
30
0
-
-
1.6
ENST00000246914
6
ENSE00000947958
chr17:
40937284-40937500
217
WNK4_HUMAN
420-492
73
0
-
-
1.7
ENST00000246914
7
ENSE00000947959
chr17:
40939296-40939560
265
WNK4_HUMAN
493-581
89
2
C:557-565
D:557-565
9
9
1.8
ENST00000246914
8
ENSE00000947960
chr17:
40939796-40939917
122
WNK4_HUMAN
581-621
41
0
-
-
1.9
ENST00000246914
9
ENSE00000947961
chr17:
40940148-40940206
59
WNK4_HUMAN
622-641
20
0
-
-
1.10
ENST00000246914
10
ENSE00000947962
chr17:
40940308-40940425
118
WNK4_HUMAN
641-680
40
0
-
-
1.11
ENST00000246914
11
ENSE00000947963
chr17:
40940699-40940815
117
WNK4_HUMAN
681-719
39
0
-
-
1.12
ENST00000246914
12
ENSE00000947964
chr17:
40945610-40945747
138
WNK4_HUMAN
720-765
46
0
-
-
1.13
ENST00000246914
13
ENSE00000947965
chr17:
40946632-40946686
55
WNK4_HUMAN
766-784
19
0
-
-
1.14b
ENST00000246914
14b
ENSE00001380389
chr17:
40946790-40947400
611
WNK4_HUMAN
784-987
204
0
-
-
1.15
ENST00000246914
15
ENSE00000947967
chr17:
40947479-40947539
61
WNK4_HUMAN
988-1008
21
0
-
-
1.16b
ENST00000246914
16b
ENSE00000947968
chr17:
40947643-40948051
409
WNK4_HUMAN
1008-1144
137
0
-
-
1.17b
ENST00000246914
17b
ENSE00001376713
chr17:
40948141-40948340
200
WNK4_HUMAN
1144-1211
68
0
-
-
1.18
ENST00000246914
18
ENSE00000947970
chr17:
40948499-40948596
98
WNK4_HUMAN
1211-1243
33
0
-
-
1.19
ENST00000246914
19
ENSE00000947971
chr17:
40948704-40949061
358
WNK4_HUMAN
1244-1244
1
0
-
-
[
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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