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4AW4
Asym. Unit
Info
Asym.Unit (333 KB)
Biol.Unit 1 (109 KB)
Biol.Unit 2 (111 KB)
Biol.Unit 3 (110 KB)
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(1)
Title
:
ENGINEERED VARIANT OF LISTERIA MONOCYTOGENES INLB INTERNALIN DOMAIN WITH AN ADDITIONAL LEUCINE RICH REPEAT INSERTED
Authors
:
H. H. Niemann, D. W. Heinz
Date
:
31 May 12 (Deposition) - 15 Aug 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Protein Binding, Lrr, Protein Engineering, Receptor Binding, Protein Protein Interaction, Cell Invasion, Virulence Factor, Hgf Receptor Ligand, C-Met Ligand
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. H. Niemann, E. Gherardi, W. M. Bleymuller, D. W. Heinz
Engineered Variants Of Inlb With An Additional Leucine-Rich Repeat Discriminate Between Physiologically Relevant And Packing Contacts In Crystal Structures Of The Inlb:Met Complex.
Protein Sci. V. 21 1528 2012
[
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Hetero Components
(2, 33)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
11
Ligand/Ion
GLYCEROL
2
SO4
22
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:104 , SER B:106 , HOH B:2056 , ASN C:104 , SER C:106 , ASN C:128
BINDING SITE FOR RESIDUE GOL B1343
02
AC2
SOFTWARE
SER A:287 , LEU A:288 , LYS A:302
BINDING SITE FOR RESIDUE SO4 A1343
03
AC3
SOFTWARE
ASP A:222 , ARG A:246
BINDING SITE FOR RESIDUE SO4 A1344
04
AC4
SOFTWARE
HIS A:241 , CYS A:264 , LEU A:265
BINDING SITE FOR RESIDUE SO4 A1345
05
AC5
SOFTWARE
SER A:295 , ASP A:296
BINDING SITE FOR RESIDUE SO4 A1346
06
AC6
SOFTWARE
VAL A:183 , HIS A:184 , PRO A:186 , ARG A:206
BINDING SITE FOR RESIDUE SO4 A1347
07
AC7
SOFTWARE
VAL B:183 , PRO B:186 , ARG B:206
BINDING SITE FOR RESIDUE SO4 B1344
08
AC8
SOFTWARE
GLU C:151 , HIS C:173 , HOH C:2060
BINDING SITE FOR RESIDUE SO4 C1343
09
AC9
SOFTWARE
GLU B:151 , HIS B:173 , HOH B:2080 , HOH B:2089
BINDING SITE FOR RESIDUE SO4 B1345
10
BC1
SOFTWARE
GLU A:151 , HIS A:173 , HOH A:2069
BINDING SITE FOR RESIDUE SO4 A1348
11
BC2
SOFTWARE
ASN A:104 , SER A:106 , PHE A:126 , ASN A:128
BINDING SITE FOR RESIDUE GOL A1349
12
BC3
SOFTWARE
LYS A:239 , SER A:261 , HIS A:334 , HOH A:2112 , HOH A:2114 , THR C:71
BINDING SITE FOR RESIDUE GOL A1350
13
BC4
SOFTWARE
THR A:71 , ASN A:73 , HOH A:2129 , SER C:261 , HIS C:334
BINDING SITE FOR RESIDUE GOL A1351
14
BC5
SOFTWARE
GLN C:219 , HIS C:241 , GLU C:263 , HOH C:2085
BINDING SITE FOR RESIDUE GOL C1344
15
BC6
SOFTWARE
GLN C:272 , SER C:273 , ASN C:274
BINDING SITE FOR RESIDUE GOL C1345
16
BC7
SOFTWARE
THR B:202 , VAL B:203 , SER B:205 , ARG B:206 , HOH B:2099 , HOH B:2188 , ASP C:285
BINDING SITE FOR RESIDUE GOL B1346
17
BC8
SOFTWARE
HIS A:241 , GLU A:263 , HOH A:2090
BINDING SITE FOR RESIDUE GOL A1352
18
BC9
SOFTWARE
HIS B:241 , GLU B:263
BINDING SITE FOR RESIDUE GOL B1347
19
CC1
SOFTWARE
THR B:71 , ASN B:73 , SER B:261 , HIS B:334 , HOH B:2147 , HOH B:2149
BINDING SITE FOR RESIDUE GOL B1348
20
CC2
SOFTWARE
ASN A:274 , GLN B:272 , SER B:273 , ASN B:274
BINDING SITE FOR RESIDUE GOL A1353
21
CC3
SOFTWARE
PRO B:323 , ARG B:332 , HOH B:2179
BINDING SITE FOR RESIDUE SO4 B1349
22
CC4
SOFTWARE
TYR C:321 , ARG C:332 , HOH C:2140 , HOH C:2141
BINDING SITE FOR RESIDUE SO4 C1346
23
CC5
SOFTWARE
HOH B:2113 , ARG C:246
BINDING SITE FOR RESIDUE SO4 C1347
24
CC6
SOFTWARE
PRO A:323 , ARG A:332 , HOH A:2121
BINDING SITE FOR RESIDUE SO4 A1354
25
CC7
SOFTWARE
SER C:287 , LEU C:288 , LYS C:302
BINDING SITE FOR RESIDUE SO4 C1348
26
CC8
SOFTWARE
SER B:287 , LEU B:288 , LYS B:302 , HOH B:2164
BINDING SITE FOR RESIDUE SO4 B1350
27
CC9
SOFTWARE
VAL C:183 , HIS C:184 , PRO C:186 , ARG C:206
BINDING SITE FOR RESIDUE SO4 C1349
28
DC1
SOFTWARE
LYS B:131 , HIS C:173 , ASN C:195 , ASP C:217
BINDING SITE FOR RESIDUE SO4 B1351
29
DC2
SOFTWARE
HIS B:241 , LEU B:265 , HOH B:2109
BINDING SITE FOR RESIDUE SO4 B1352
30
DC3
SOFTWARE
LYS A:131 , HIS A:173
BINDING SITE FOR RESIDUE SO4 A1355
31
DC4
SOFTWARE
PRO A:291 , GLU A:292 , ILE A:293 , ILE A:294
BINDING SITE FOR RESIDUE SO4 A1356
32
DC5
SOFTWARE
THR B:208 , LYS C:252
BINDING SITE FOR RESIDUE SO4 C1350
33
DC6
SOFTWARE
SER B:295 , ASP B:296
BINDING SITE FOR RESIDUE SO4 B1353
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 18)
Info
All PROSITE Patterns/Profiles
1: LRR (A:121-142,B:121-142,C:121-142|A:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
INLB_LISMO
99-120
121-142
143-164
165-186
187-208
209-230
18
A:121-142
B:121-142
C:121-142
A:143-164
B:143-164
C:143-164
A:165-186
B:165-186
C:165-186
A:187-208
B:187-208
C:187-208
A:209-230
B:209-230
C:209-230
A:231-252
B:231-252
C:231-252
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 5)
Info
All SCOP Domains
1a: SCOP_d4aw4a2 (A:263-342)
1b: SCOP_d4aw4b2 (B:263-342)
2a: SCOP_d4aw4a1 (A:36-262)
2b: SCOP_d4aw4b1 (B:36-262)
2c: SCOP_d4aw4c1 (C:36-262)
View:
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Classes
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Families
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(
)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
automated matches
(93)
Protein domain
:
automated matches
(93)
Listeria monocytogenes [TaxId: 169963]
(7)
1a
d4aw4a2
A:263-342
1b
d4aw4b2
B:263-342
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Listeria monocytogenes [TaxId: 169963]
(2)
2a
d4aw4a1
A:36-262
2b
d4aw4b1
B:36-262
2c
d4aw4c1
C:36-262
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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