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Biol. Unit 1
Info
Asym.Unit (170 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (42 KB)
Biol.Unit 3 (43 KB)
Biol.Unit 4 (42 KB)
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(1)
Title
:
STRUCTURE OF THE Y46F MUTANT OF HUMAN CYTOCHROME C
Authors
:
B. S. Rajagopal, J. A. R. Worrall, M. A. Hough
Date
:
22 Feb 13 (Deposition) - 23 Oct 13 (Release) - 11 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Oxidoreductase, Respiration, Apoptosis, Electron Transfer
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Rajagopal, A. N. Edzuma, M. A. Hough, K. L. I. M. Blundell, V. E. Kagan, A. A. Kapralov, L. A. Fraser, J. N. Butt, G. G. Silkstone, M. T. Wilson, D. A. Svistunenko, J. A. R. Worrall
The Hydrogen Peroxide Induced Radical Behaviour In Human Cytochrome C Phospholipid Complexes: Implications For The Enhanced Pro-Apoptotic Activity Of The G41S Mutant
Biochem. J. V. 456 441 2013
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: HEME C (HECa)
1b: HEME C (HECb)
1c: HEME C (HECc)
1d: HEME C (HECd)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEC
1
Ligand/Ion
HEME C
2
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:13 , CYS A:14 , CYS A:17 , HIS A:18 , THR A:28 , PRO A:30 , THR A:40 , GLY A:41 , TYR A:48 , THR A:49 , ASN A:52 , TRP A:59 , TYR A:67 , LEU A:68 , THR A:78 , LYS A:79 , MET A:80 , PHE A:82 , HOH A:2070 , LYS B:55
BINDING SITE FOR RESIDUE HEM A 105
2
AC4
SOFTWARE
LYS A:55 , LYS D:13 , CYS D:14 , CYS D:17 , HIS D:18 , THR D:28 , PRO D:30 , THR D:40 , GLY D:41 , TYR D:48 , THR D:49 , ASN D:52 , TRP D:59 , TYR D:67 , THR D:78 , LYS D:79 , MET D:80 , ILE D:81 , PHE D:82 , ILE D:85 , HOH D:2042
BINDING SITE FOR RESIDUE HEM D 105
3
AC5
SOFTWARE
LYS A:87 , LYS A:88 , HOH A:2087 , HOH A:2126 , HOH A:2144 , HOH A:2145 , LYS D:79
BINDING SITE FOR RESIDUE PO4 A1105
4
AC6
SOFTWARE
LYS A:13 , LYS B:73
BINDING SITE FOR RESIDUE PO4 A1106
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_044450 (G41S, chain A, )
2: VAR_048850 (K55R, chain A, )
3: VAR_002204 (M65L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_044450
G
42
S
CYC_HUMAN
Disease (THC4)
---
A
G
41
S
2
UniProt
VAR_048850
K
56
R
CYC_HUMAN
Polymorphism
11548795
A
K
55
R
3
UniProt
VAR_002204
M
66
L
CYC_HUMAN
Unclassified
---
A
M
65
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTC (A:1-102)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CYC_HUMAN
2-103
1
A:1-102
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3zooa_ (A:)
1b: SCOP_d3zoob_ (B:)
1c: SCOP_d3zooc_ (C:)
1d: SCOP_d3zood_ (D:)
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Protein Domains
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Mitochondrial cytochrome c
(81)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d3zooa_
A:
1b
d3zoob_
B:
1c
d3zooc_
C:
1d
d3zood_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (170 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (42 KB)
Header - Biol.Unit 2
Biol.Unit 3 (43 KB)
Header - Biol.Unit 3
Biol.Unit 4 (42 KB)
Header - Biol.Unit 4
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