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Getting 'Biological Unit' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3ZLQ
Asym. Unit
Info
Asym.Unit (310 KB)
Biol.Unit 1 (303 KB)
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(1)
Title
:
BACE2 XAPERONE COMPLEX
Authors
:
A. Kuglstatter, M. Stihle
Date
:
04 Feb 13 (Deposition) - 01 May 13 (Release) - 05 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hydrolase-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Hilpert, W. Guba, T. J. Woltering, W. Wostl, E. Pinard, H. Mauser, A. V. Mayweg, M. Rogers-Evans, R. Humm, D. Krummenacher, T. Muser, C. Schnider, H. Jacobsen, L. Ozmen, A. Bergadano, D. W. Banner, R. Hochstrasser, A. Kuglstatter, P. David-Pierson, H. Fischer, A. Polara, R. Narquizian
Beta-Secretase (Bace1) Inhibitors With High In Vivo Efficacy Suitable For Clinical Evaluation In Alzheimer'S Disease.
J. Med. Chem. V. 56 3980 2013
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 5-ETHOXY-PYRIDINE-2-CARBOXYLIC ACI... (6T9a)
1b: 5-ETHOXY-PYRIDINE-2-CARBOXYLIC ACI... (6T9b)
View:
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No.
Name
Count
Type
Full Name
1
6T9
2
Ligand/Ion
5-ETHOXY-PYRIDINE-2-CARBOXYLIC ACID [3-((R)-2-AMINO-5,5-DIFLUORO-4-METHYL-5,6-DIHYDRO-4H-[1,3]OXAZIN-4-YL)-4-FLUORO-PHENYL]-AMIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:26 , GLY A:27 , GLY A:29 , LEU A:46 , ASP A:48 , TYR A:87 , PHE A:124 , TRP A:131 , ASP A:241 , SER A:242 , GLY A:243 , THR A:245 , ALA A:347
BINDING SITE FOR RESIDUE 6T9 A1398
2
AC2
SOFTWARE
ASP B:25 , SER B:26 , GLY B:27 , ARG B:28 , GLY B:29 , ASP B:48 , TYR B:87 , PHE B:124 , TRP B:131 , ASP B:241 , SER B:242 , GLY B:243 , THR B:245 , ALA B:347
BINDING SITE FOR RESIDUE 6T9 B1398
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (A:30-367,B:30-367)
2: ASP_PROTEASE (A:45-56,B:45-56|A:238-249,B:238-24...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
BACE2_HUMAN
92-429
2
A:30-367
B:30-367
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
BACE2_HUMAN
107-118
300-311
4
A:45-56
B:45-56
A:238-249
B:238-249
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Exons
(9, 18)
Info
All Exons
Exon 1.1 (A:16-42 | B:15-42)
Exon 1.3a (A:43-72 | B:43-72)
Exon 1.6 (A:72-144 | B:72-144)
Exon 1.7d (A:145-187 (gaps) | B:145-187 (gaps...)
Exon 1.8 (A:188-232 | B:188-232)
Exon 1.9a (A:233-265 | B:233-266)
Exon 1.10 (A:272-316 | B:267-316 (gaps))
Exon 1.12 (A:317-373 | B:317-373)
Exon 1.13c (A:373-397 | B:373-397)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.3a
03: Boundary 1.3a/1.6
04: Boundary 1.6/1.7d
05: Boundary 1.7d/1.8
06: Boundary 1.8/1.9a
07: Boundary 1.9a/1.10
08: Boundary 1.10/1.12
09: Boundary 1.12/1.13c
10: Boundary 1.13c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000330333
1
ENSE00001304779
chr21:
42539728-42540502
775
BACE2_HUMAN
1-104
104
2
A:16-42
B:15-42
27
28
1.3a
ENST00000330333
3a
ENSE00001294412
chr21:
42598193-42598281
89
BACE2_HUMAN
105-134
30
2
A:43-72
B:43-72
30
30
1.6
ENST00000330333
6
ENSE00001313528
chr21:
42609440-42609656
217
BACE2_HUMAN
134-206
73
2
A:72-144
B:72-144
73
73
1.7d
ENST00000330333
7d
ENSE00001293136
chr21:
42613746-42613874
129
BACE2_HUMAN
207-249
43
2
A:145-187 (gaps)
B:145-187 (gaps)
43
43
1.8
ENST00000330333
8
ENSE00001315110
chr21:
42615303-42615437
135
BACE2_HUMAN
250-294
45
2
A:188-232
B:188-232
45
45
1.9a
ENST00000330333
9a
ENSE00001299298
chr21:
42617889-42617990
102
BACE2_HUMAN
295-328
34
2
A:233-265
B:233-266
33
34
1.10
ENST00000330333
10
ENSE00001319314
chr21:
42622679-42622828
150
BACE2_HUMAN
329-378
50
2
A:272-316
B:267-316 (gaps)
45
50
1.12
ENST00000330333
12
ENSE00001297180
chr21:
42629085-42629253
169
BACE2_HUMAN
379-435
57
2
A:317-373
B:317-373
57
57
1.13c
ENST00000330333
13c
ENSE00001820917
chr21:
42647298-42648524
1227
BACE2_HUMAN
435-518
84
2
A:373-397
B:373-397
25
25
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3zlqa_ (A:)
1b: SCOP_d3zlqb_ (B:)
2a: SCOP_d3zlqc_ (C:)
2b: SCOP_d3zlqd_ (D:)
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Protein Domains
(
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Organisms
(
)
(
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Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d3zlqa_
A:
1b
d3zlqb_
B:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Llama (Lama glama) [TaxId: 9844]
(62)
2a
d3zlqc_
C:
2b
d3zlqd_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
Info
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Chain B
Chain C
Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (310 KB)
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